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GT15070

CSHL Arabidopsis genetrap mutant lines

Original: GT15070

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15070

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14782425 [Map]; Strand: c
      • AT4G30190.2 - [+] show detail - H(+)-ATPase 2
        Distance: -6367; Region: intergenic
      • AT4G30200.1 - [+] show detail - vernalization5/VIN3-like
        Distance: 4208; Region: intergenic
    Flanking Genome Sequence: GT15070 - 3-prime edge 
    ATGAAACGGT AGAGGATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA 
    CTTATATGGT TCTGGCTTTT ATCATTTGAT AATGATTCCA AATCAATTTC 
    TTAAGAAATA TAATTGTCCG TACTTATCTT TCTAAACTAA CGATCACTGG 
    TTGATTAAAT TAATAGTAGT AACTAAAAAT AATTCAATAG CTTTCAAAGT 
    TGTATCATCT TAATGGGATC TTTAATAATT GCATTGTAAA ATAATACACC 
    GTCACAAGGA TAACGAGTTT CCTCGTGCCG TGTCTCCCGC AGCAAGTTGC 
    ATTTCATCTT CACTCGACAA ANNNNCNTNA TTTCTTTTAC NTACTANCTC 
    GCTAAAAGCG CAAAGTGTTT GGTATGAGAG ATACATAACG ATATCTATAT 
    GTGCAGTTTG TGTTCTCAAG ATTTTATCGT CCAAAATTTT AATAGATATG 
    TAGAGATTGT ATATATTTTA ACAGAAAAAA ACTCATGAAT TGATCATTTG 
    GAAATATTAG TTTGAAAACC ATAGAGAAGT CGGAGGAATT ATAGACACAC 
    ACACGCTTGT CCTATAATAT TTAGGACCAC TCTTCAGTGA TAGCTAGCTA 
    ACACCAATAC TAAAATCAAG TCAATTACGT AATGAACTAC CAATGCTTTA 
    TATTAATTAT TCTTGG

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT15070 - 3-prime edge 
    TTTACTTTAT TTCTTTTACG TACTAGCTCG CTAAAAGCGC AAAGTGTTTG 
    GTATGAGAGA TACATAACGA TATCTATATG TGCAGTTTGT GTTCTCAAGA 
    TTTTATCGTC CAAAATTTTA ATAGATATGT AGAGATTGTA TATATTTTAA 
    CAGAAAAAAA CTCATGAATT GATCATTTGG AAATATTAGT TTGAAAAC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 362372 [Map]; Strand: w
      • AT4G00870.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT15070 - 5-prime edge 
    CCTACTTTCT CCCTGACCTA ACCTGACTCA AGCGCGACGC GTTCGCGTGT 
    TGTACACGAC AATCCATTTC CATTAACGCA CTCATCAATG CCGACGTAGG 
    ATGGTTCACA TTCTCTGTCT GAACCCTAAT TATGGCTTCT TCTCCCACGA 
    CCATCACTTG CACTTTCAAG TCAGAGACTC TGTTTGATTT TGAAGGTTTC 
    TGGTTCACTT GGTACTCAAC GGAAGACGGA GACGTATTGC TGCTGCTGTT 
    GTCTAATTTA TCTGTCTCCG TCATCGTCAT CTTCATTTTC T

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 362367 [Map]; Strand: w
      • AT4G00870.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT15070 - 5-prime edge 
    TTCATCCTAC TTTCTCCCTG ACCTAACCTG ACTCAAGCGC GACGCGTTCG 
    CGTGTTGTAC ACGACAATCC ATTTCCATTA ACGCACTCAT CAATGCCGAC 
    GTAGGATGGT TCACATTCTC TGTCTGAACC CTAATTATGG CTTCTTCTCA 
    CTCGACCATC ACTTGCACTT TCAAGTCAGA GACTCTGTTT GATTTTGAAG 
    GTTTCTGGTT CACTTGGTAC TCAACGGAAG ACGGAGACGT ATTGCTGCTG 
    CTGTTGTCTA ATTTATCTGT CTCCGTCATC GTCATCTTCA TTTTCTT

AT4G00870.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G16430.1); Has 3066 Blast hits to 2737 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 39; Plants - 2956; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G30190.2

Model type
Protein coding
Short Description
H(+)-ATPase 2
Curator Summary
belongs to the P-type ATPase superfamily of cation-transporting ATPases, pumps protons out of the cell, generating a proton gradient that drives the active transport of nutrients by proton symport. has two autoinhibitory regions within the C-terminal dom
Computational Description
H(+)-ATPase 2 (HA2); FUNCTIONS IN: ATPase activity, hydrogen-exporting ATPase activity, phosphorylative mechanism; INVOLVED IN: cation transport, metabolic process, ATP biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, plasma-membrane proton-efflux (InterPro:IPR006534), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: H(+)-ATPase 1 (TAIR:AT2G18960.1).
Link
InterPro Scan - TAIR

AT4G30200.1

Model type
Protein coding
Short Description
vernalization5/VIN3-like
Curator Summary
Encodes a protein with similarity to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain. VEL1 is a part of a polycomb repressive complex (PRC2) that is involved in epigenetic silencing of the FLC flowering locus.
Computational Description
vernalization5/VIN3-like (VEL1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082), Fibronectin, type III-like fold (InterPro:IPR008957), Fibronectin, type III (InterPro:IPR003961); BEST Arabidopsis thaliana protein match is: Fibronectin type III domain-containing protein (TAIR:AT5G57380.1); Has 270 Blast hits to 250 proteins in 39 species: Archae - 0; Bacteria - 2; Metazoa - 8; Fungi - 14; Plants - 239; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link
InterPro Scan - TAIR