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GT15071

CSHL Arabidopsis genetrap mutant lines

Original: GT15071

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15071

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14782425 [Map]; Strand: c
      • AT4G30190.2 - [+] show detail - H(+)-ATPase 2
        Distance: -6367; Region: intergenic
      • AT4G30200.1 - [+] show detail - vernalization5/VIN3-like
        Distance: 4208; Region: intergenic
    Flanking Genome Sequence: GT15071 - 3-prime edge 
    ATGAAACGGT AGAGGATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA 
    CTTATATGGT TCTGGCTTTT ATCATTTGAT AATGATTCCA AATCAATTTC 
    TTAAGAAATA TAATTGTCCG TACTTATCTT TCTAAACTAA CGATCACTGG 
    TTGATTAAAT TAATAGTAGT AACTAAAAAT AATTCAATAG CTTTCAAAGT 
    TGTATCATCT TAATGGGATC TTTAATAATT GCATTGTAAA ATAATACACC 
    GTCACAAGGA TAACGAGTTT CCTCGTGCCG TGTCTCCCGC AGCAAGTTGC 
    ATTTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14782370 [Map]; Strand: c
      • AT4G30190.2 - [+] show detail - H(+)-ATPase 2
        Distance: -6312; Region: intergenic
      • AT4G30200.1 - [+] show detail - vernalization5/VIN3-like
        Distance: 4263; Region: intergenic
    Flanking Genome Sequence: GT15071 - 5-prime edge 
    CTTTATCCCT GCATATAAGT AACTTCCACA AGTTGGTCTC TCTGTAAGGA 
    GATAAAATTT AATGAACTAT TTGTCCATAT GCACATGGTT ACAGACATTT 
    ACGTGTAAAG ATATGTATAT GTGCATCAGT GCATATGTAT GTGGATCCAC 
    ATGAATTTAA TCTATTTGTG TGGACCAAAA GACAAAACGG TCCAATGTTA 
    CCAACCCTCC TGGTTAAAAT TCCAAATGAT ATTAGTATTT TCTTTAGGAG 
    TCTTAGTACG ATTCGTACAA AAGTTAATTT CGTCTCAACT AATATTATGT 
    GTAATATTAC AAAGTGAAGA GGTTAGGTAG CGCAGGTTCT TGTAATGGAA 
    GGAAAAAGTT ACGATATCTC GGTACGGTTT TATTTTAAAG TTTTACAAAT 
    TTTCCTACTT TATTCACTTT TGGGTCGCAT ATAGCTGTGA GTTCAACATC 
    CTAGTCTCTT TGGTTGACCG TCCACTTGCT CGTGGGGTGT TGACTTGTTG 
    GGATTTACTT TCACGCAGTT GTGTATAACT TTGAGTATCA TTTTATGGTG 
    AAAAAGTCTT CTTTGGTTGA CCAAGAAAAC TAGTCGATCA CGTATTCACG 
    AAAAATTAC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14782374 [Map]; Strand: c
      • AT4G30190.2 - [+] show detail - H(+)-ATPase 2
        Distance: -6316; Region: intergenic
      • AT4G30200.1 - [+] show detail - vernalization5/VIN3-like
        Distance: 4259; Region: intergenic
    Flanking Genome Sequence: GT15071 - 5-prime edge 
    CCTACTTTCT CCCTGCATAT AAGTAACTTC CACAAGTTGG TCTCTCTGTA 
    AGGAGAAAAA TTTAATGAAC TATTTGTCCA TATGCACATG GTTACAGACA 
    TTTACGTGTA AAGATATGTA TATGTGCATC AGTGCATATG TATGTGGATC 
    CACATGAATT TAATCTATTT GTGTGGACCA AAAGACAAAA CGGTCCAATG 
    TTACCAACCC TCCTGGTTAA AATTCCAAAT GATATTAGTA TTTTCTTTAG 
    GAGTCTTAGT ACGATTCGTA CAAAAGTTAA TTTCGTCTCA ACTAATATTA 
    TGTGTAATAT TACAAAGTGA AGAGGTTAGG TAGCGCAGGT TCTTGTAATG 
    GAAGGAAAAA GTTACGATAT CTCGGTACGG TTTTATTTTA AAGTTTTACA 
    AATTTTCCTA CTTTATTCAC TTTGGTCGCA TTTAGCTGTG AGTTCAACAT 
    CCTAGTCTCT TTGGTTGACC GTCCACTTGC TCGTGGGGTG TTGACTTGTT 
    GGGATTTACT TTCACGCAGT TGTGTATAAC TTTGAGTATC ATTTTATGGT 
    GAAAAAGTCT TCTTTGGTTG ACCAAGAAAA CTAGTCGATC ACGTATTCAC 
    GAAAATTACA TG

AT4G30190.2

Model type
Protein coding
Short Description
H(+)-ATPase 2
Curator Summary
belongs to the P-type ATPase superfamily of cation-transporting ATPases, pumps protons out of the cell, generating a proton gradient that drives the active transport of nutrients by proton symport. has two autoinhibitory regions within the C-terminal dom
Computational Description
H(+)-ATPase 2 (HA2); FUNCTIONS IN: ATPase activity, hydrogen-exporting ATPase activity, phosphorylative mechanism; INVOLVED IN: cation transport, metabolic process, ATP biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, plasma-membrane proton-efflux (InterPro:IPR006534), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: H(+)-ATPase 1 (TAIR:AT2G18960.1).
Link
InterPro Scan - TAIR

AT4G30200.1

Model type
Protein coding
Short Description
vernalization5/VIN3-like
Curator Summary
Encodes a protein with similarity to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain. VEL1 is a part of a polycomb repressive complex (PRC2) that is involved in epigenetic silencing of the FLC flowering locus.
Computational Description
vernalization5/VIN3-like (VEL1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082), Fibronectin, type III-like fold (InterPro:IPR008957), Fibronectin, type III (InterPro:IPR003961); BEST Arabidopsis thaliana protein match is: Fibronectin type III domain-containing protein (TAIR:AT5G57380.1); Has 270 Blast hits to 250 proteins in 39 species: Archae - 0; Bacteria - 2; Metazoa - 8; Fungi - 14; Plants - 239; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link
InterPro Scan - TAIR