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GT15112

CSHL Arabidopsis genetrap mutant lines

Original: GT15112

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15112

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16616131 [Map]; Strand: w
      • AT5G41540.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: -68; Region: promoter
    Flanking Genome Sequence: GT15112 - 5-prime edge 
    CCTACTTTCT CCCTGGTAAG AGAACTTGAA GAATATATCG GAGCGTTGCA 
    TTGACTTTGA AAGGAGTTCT AATGCAGTTA TCCAAACACT AAATAGATCG 
    AGGAGAAACT CTCTTAGAGA TTTGAATGCT GATTGGTTGA TTTTTTAAGT 
    CTTCGTATGA TGGAACTTCC TCATCGCCGT GGCCTCCACT ACACATAATA 
    AAAAACCAAA ACACATTATC AGATATTCTT TTGCAGGTCA CAATGAAACA 
    GCGATACGAT ATTAAAAAAG ATGATAGAGA GAGAGAGAGA CTTTTCTCTT 
    CTTCTGGTGT TTCTTAGAAA AGCAATCTAT GGGATTCATG AAACAATTGT 
    GAGTGCTTGA TATTAATAAC ATTATAAATC TTGCAAATGG GTTTTCTGAA 
    ATATAGCAGA CTTAATCAAT TGACTTGGTT ATTTATTATC TCTTTCTACT 
    AGTATAACAA AACCTAATCA GAATGTATGT CTTTTCAATA GTTGCATAAA 
    ATATATTCTT AATGACTAGA CAACTATCCT AACAGTCAAA GAGAGGATAG 
    ACGAGGAGCA GCTCAAATAT ATCTTTCTTG AGATTTGACA GTGGCTGCTG 
    AATTTCAAAC ACAACGAACC AGACACTTTT ATCAAACTTT TCTGAAATTA 
    TAACTACAAA GGCTTCATAA AAATATGAGA AGATAAAAAA TCTTCGGGGT 
    ATAAATGAAA CATGTTTC

AT5G41540.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Computational Description
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G41550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR