Home
Mutant Lines
GT15142

GT15142

CSHL Arabidopsis genetrap mutant lines

Original: GT15142

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15142

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 2948122 [Map]; Strand: c
- AT3G09600.1 - [+] show detail - Homeodomain-like superfamily protein
  Distance: 0; Region: intron7 (CDS)
- AT3G09600.2 - [+] show detail - Homeodomain-like superfamily protein
  Distance: 0; Region: intron7 (CDS)

ATAAGAGGAC TTTCCTCTGC AGCATCATTA CAATCCGACT AGCTGAGGTT 
AGATTAAATT TGATCACGCA AGCGCAAAAA AACTCATTTC AATGTAAGGA 
ACCAAAGATC ATAAAAGAAG TGCCTCCAAC TCATTGGTTG AGAGTGAAAT 
AGTTTCAGAC TCTGAGAAAG TTGGTCATCA CAAATCTTTT ATCGCAAATT 
TAACACTTAC AGTGGATTCT AAATCAGGGT TTGATAAGTT AACTGTGAGG 
TTTCTCATCA ATAACAGAAC CTGTAAACAT CATACTATGT GATTAGTGAA 
GAAATGCTAA GAGCTTGAAC ACCAATTAAT CTGAAAGCTT GTAAACTCTT 
GACTCACAGT TTCGAAATTT ATAGGATCCA TTTCCTTGAG CTTTTCCACA 
TGGCCTCTCG TTTCAGGATC AAAGACACTC CCAATGAAAT TATAAACTTC

AT3G09600.1

Model type: Protein coding
Short Description: Homeodomain-like superfamily protein
Computational Description: Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: LHY/CCA1-like 1 (TAIR:AT5G02840.3); Has 1480 Blast hits to 1470 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 6; Plants - 1120; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G09600.2

Model type: Protein coding
Short Description: Homeodomain-like superfamily protein
Computational Description: Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: LHY/CCA1-like 1 (TAIR:AT5G02840.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR