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GT15145

CSHL Arabidopsis genetrap mutant lines

Original: GT15145

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15145

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4101429 [Map]; Strand: c
      • AT3G12890.1 - [+] show detail - activator of spomin::LUC2
        Distance: 956; Region: intergenic
      • AT3G12900.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: -3147; Region: intergenic
    Flanking Genome Sequence: GT15145 - 3-prime edge 
    AGAAAATAGT TGTAACTTTT ATATTCAAGA TAAAATCATC ACTATAAATC 
    ATGTGCTTTA TGATCATTTT AACTGCTTGC TTTGATCATT TTTGAAAACC 
    GGATTTAAAT TTAAATCCTA ACAATTAACA ATTTAACATG ACATGTAGGT 
    CTAGATAGTT TATGTGGAAG TGGGCAACAA CAAACAATCT CTTTAGTTCA 
    TTGTTAGCCC GACAAAATTA CTACTAGTTT ATAGCACGTA TGGGTCTCAA 
    CCGGATCCAT ATAATGTCTC ACGGATTGAA TATAATGTAT CATAGAAACA 
    TATTTACATA TCTATGTCAT TGAAGTGTGT TGACCCTGCT TCTTGACTTT 
    GGGCACATAT ACGACACAAT CTATCGCATA CGCTTAAGTC AAAACAAGAT 
    ATAAAGATTG CATCAAGTAA TCATTAATTG TTATC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4101244 [Map]; Strand: c
      • AT3G12890.1 - [+] show detail - activator of spomin::LUC2
        Distance: 771; Region: intergenic
      • AT3G12900.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: -3332; Region: intergenic
    Flanking Genome Sequence: GT15145 - 5-prime edge 
    TCCTACTTTC TCCCTGCTAA TTTTCATGTA TTTACCACTA GAGGTGTGCT 
    GAGAAGGAAA AAGTGGAAAA GTAAAAAAGC AGATGAGAGG GCTTCAGCCT 
    TCAACTTCAC ATATATTCGT CAAAGCAGAA AATAAAGGGG ACAACTTCAG 
    AGAATATAAT TTGCAGATTT TGAAGCCTTA TTATGTTTGT TATAAGAATT 
    ATATGTCTTA AAAAGTGATT GGAACTTGGT TCCGTATCAT GTCTTTC

AT3G12890.1

Model type
Protein coding
Short Description
activator of spomin::LUC2
Curator Summary
Encodes a protein belonging to a class of CCT (CONSTANS, CONSTANS-like, TOC1) domain proteins. The protein contains a 43 amino acid-long sequence with high homology to the CCT domain but does not have any B-box or GATA-type zinc finger domains. Functions as a transcriptional activator and regulates the expression of at least a subset of sugar-inducible genes.
Computational Description
activator of spomin::LUC2 (ASML2); CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT5G41380.1); Has 1405 Blast hits to 1405 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1344; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G12900.1

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G55290.1); Has 8653 Blast hits to 8615 proteins in 1001 species: Archae - 0; Bacteria - 1126; Metazoa - 119; Fungi - 1049; Plants - 4930; Viruses - 0; Other Eukaryotes - 1429 (source: NCBI BLink).
Link
InterPro Scan - TAIR