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GT15159

CSHL Arabidopsis genetrap mutant lines

Original: GT15159

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15159

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8046670 [Map]; Strand: w
      • AT2G18540.1 - [+] show detail - RmlC-like cupins superfamily protein
        Distance: -1662; Region: intergenic
      • AT2G18550.1 - [+] show detail - homeobox protein 21
        Distance: 2993; Region: intergenic
    Flanking Genome Sequence: GT15159 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAGT 
    TGCACAAGCT GTGGAATACA ATTTATGAAT TTTATATGGA AAAAGAGGAA 
    AACTTAATAT ATGTGAAAAA AGAAAGAAAG AGAAAAACGA TCCTATTTGT 
    TGCGATTATG TATTATTTAG GCCCATTTAT ATCTTAGCCA ACGGCCCATT 
    GAAAAACTGT CTCATATATT ATTTAATAAG AGTATAGAGA GCCACATTAT 
    TTTGGGTCAA AATTGAGTAA ATGACTTTGA TGACCTGATA ATATTAGAAG 
    CTATTTTTCC AAATAACGAC TATGTATTAG AGAAATAACA TAGTGTATAC 
    CGAATAACGA TCGAATTTTT ATGCTTAAGT CATGCTCTAC TTGACTTAAA 
    TCGAATTTTT ATGCTTAAGT CATGATTAGT GTTAATTTTA AAGAAACATG 
    ATTATCTACA TATACATTTT TGCAGCCATT TTGTGAAATA AATTCTGAAG 
    TTGTAACTTA TTTACAATGG CTGCCACTAA CTTTTAATTA TTGATTTTCT 
    TTTGGCAATA AATTGATTAA CAAACAAAAA ATATTTCAAA TATATTCCAA 
    TCCCATATAT CACGCAAATT TCTCCAAAAT TTGAATTAGA TTTCGGAAAC 
    TATTTAAAAC AAAAAATATT TGACAAACCA AAATACAATT GCAATCCCTT 
    AAAATGAGCA AA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8046656 [Map]; Strand: w
      • AT2G18540.1 - [+] show detail - RmlC-like cupins superfamily protein
        Distance: -1648; Region: intergenic
      • AT2G18550.1 - [+] show detail - homeobox protein 21
        Distance: 3007; Region: intergenic
    Flanking Genome Sequence: GT15159 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGTTGCA CAAGCTGTGG 
    AATACAATTT ATGAATTTTA TATGGAAAAA GAGGAAAACT TAATATATGT 
    GAAAAAAGAA AGAAAGAGAA AAACGATCCT ATTTGTTGCG ATTATGTATT 
    ATTTAGGCCC ATTTATATCT TAGCCAACGG CCCATTGAAA AACTGTCTCA 
    TATATTATTT AATAAGAGTA TAGAGAGCCA CATTATTTTG GGTCAAAATT 
    GAGTAAATGA CTTTGATGAC CTGATAATAT TAGAAGCTAT TTTTCCAAAT 
    AACGACTATG TATTAGAGAA ATAACATAGT GTATACCGAA TAACGATCGA 
    ATTTTTATGC TTAAGTCATG CTCTACTTGA CTTAAATCGA ATTTTTATGC 
    TTAAGTCATG ATTAGTGTTA ATTTTAAAGA AACATGATTA TCTACATATA 
    CATTTTTGCA GCCATTTTGT GAAATAAATT CTGAAGTTGT AACTTATTTA 
    CAATGGCTGC CACTAACTTT TAATTATTGA TTTTCTTTTG GCAATAAATT 
    GATTAACAAA CAAAAAATAT TTCAAATATA TTCCAATCCC ATATATCACG 
    CAAATTTCTC CAAAATTTGA ATTAGATTTC GGAAACTATT TAAAACAAAA 
    AATATTTGAC AAACCAAAAT ACAATTGCAA TCCCTTAAAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8046728 [Map]; Strand: w
      • AT2G18540.1 - [+] show detail - RmlC-like cupins superfamily protein
        Distance: -1720; Region: intergenic
      • AT2G18550.1 - [+] show detail - homeobox protein 21
        Distance: 2935; Region: intergenic
    Flanking Genome Sequence: GT15159 - 5-prime edge 
    CTTTCTCCCT GTGTGCACTA ATTTTGCGAA TGATTAAGAA ACCCAAAAAA 
    ATGTAAAAAC ACTACTAAAA ATCAAGTTCT TTTGGTTAAA CATTACTTTC 
    TATCTCTTAT ACATAAGAAA AATATGACCA ACCTTTTTAA CAGCATCAAT 
    CCATGAACCA TGATATCTCG ACACATATTA TTCTATACTA AAATGCTAAG 
    ATTGAATCTG CTTGAACTAT AAAAAGTGTA CAAATCCAAT CTATGTTTCT 
    TAAAATTACA CCAATCACAC TCTTTTTTAT CTTTTATCGA TTCCGCTTTT 
    TGTTTCCAGT AAGTTGTTAC CAATGTTTCT TAGTTAGTTC ATGGTTTGAC 
    AGAATCTGAA CTTAACGAGA GCACATTAGG TGTGGGGGTC AGTCAAAGTA 
    TATCGAAAGT TTTGTTTTTA ACTTACAAAC TATAGTGTAT TTACTATCTA 
    GGGATATAAA GTTAGGCCGA TTTCTTCTGA TAAATAACTA AAGTGAGCCA 
    TGAAAAATGA TGGATGGGAA GTGAAACTGA TATTTCATGT GAGCTTCCTA 
    GATATTGAAA TTAAAAAGAG ATTGGAGTTA TTG

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8046727 [Map]; Strand: w
      • AT2G18540.1 - [+] show detail - RmlC-like cupins superfamily protein
        Distance: -1719; Region: intergenic
      • AT2G18550.1 - [+] show detail - homeobox protein 21
        Distance: 2936; Region: intergenic
    Flanking Genome Sequence: GT15159 - 5-prime edge 
    CTTTCTCCCT GTGTGCAACT AAGTTTGCGA ATGATTAAGA AACCCAAAAA 
    AATGTAAAAA CACTACTAAA AATCAAGTTC TTTTGGTTAA ACATTACTTT 
    CTATCTCTTA TACATAAGAA AAATATGACC AACCTTTTTA ACAGCATCAA 
    TCCATGAACC ATGATATCTC GACACATATT ATTCTATACT AAAATGCTAA 
    GATTGAATCT GCTTGAACTA TAAAAAGTGT ACAAATCCAA TCTATGTTTC 
    TTAAAATTAC ACCAATCACA CTCTTTTTTA TCTTTTATCG ATTCCGCTTT 
    TTGTTTCCAG TAAGTTGTTA CCAATGTTTC TTAGTTAGTT CATGGTTTGA 
    CAGAATCTGA ACTTAACGAG AGCACATTAG GTGTGGGGGT CAGTCAAAGT 
    ATATCGAAAG TTTTGTTTTT AACTTACAAA CTATAGTGTA TTTACTATCT 
    AGGGATATAA AGTTAGGCCG ATTTCTTCTG ATAAATAACT AAAGTGAGCC 
    ATGAAAAATG ATGGATGGGA AGTGAAACTG ATATTTCATG TGAGCTTCCT 
    AGATATTGAA ATTAAAAAGA GATTGGAGTT ATTGCTTCTT TGCCACCGGC 
    CACCGCTGCA AGGTTTTAAC ACCCAATACC ATTCCCTAAA CACACATTAA 
    ACTCTTAAAA ATCATTTTCT CTGTCAAATA AACTTGATGG CCTCAACATA 
    TCCCCTTCTC ATTAATTTTA GCCAAAACCA ATTAAAAAAA TTTTCGATGT 
    TTGGTGTTCC GTTTTTATTA GGTTGCATAT CCACAATGAA AATT

AT2G18540.1

Model type
Protein coding
Short Description
RmlC-like cupins superfamily protein
Computational Description
RmlC-like cupins superfamily protein; FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT4G36700.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G18550.1

Model type
Protein coding
Short Description
homeobox protein 21
Curator Summary
Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.
Computational Description
homeobox protein 21 (HB21); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 40 (TAIR:AT4G36740.1); Has 7525 Blast hits to 7522 proteins in 427 species: Archae - 0; Bacteria - 0; Metazoa - 5302; Fungi - 235; Plants - 1881; Viruses - 3; Other Eukaryotes - 104 (source: NCBI BLink).
Link
InterPro Scan - TAIR