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GT15218

CSHL Arabidopsis genetrap mutant lines

Original: GT15218

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15218

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 16838981 [Map]; Strand: w
      • AT4G35440.1 - [+] show detail - chloride channel E
        Distance: 0; Region: exon1 (CDS)
      • AT4G35440.2 - [+] show detail - chloride channel E
        Distance: 0; Region: exon1 (CDS)
      • AT4G35450.5 - [+] show detail - ankyrin repeat-containing protein 2
        Distance: -551; Region: promoter
      • AT4G35450.1 - [+] show detail - ankyrin repeat-containing protein 2
        Distance: -564; Region: promoter
      • AT4G35450.3 - [+] show detail - ankyrin repeat-containing protein 2
        Distance: -688; Region: promoter
      • AT4G35450.2 - [+] show detail - ankyrin repeat-containing protein 2
        Distance: -706; Region: promoter
      • AT4G35450.4 - [+] show detail - ankyrin repeat-containing protein 2
        Distance: -947; Region: promoter
    Flanking Genome Sequence: GT15218 - 5-prime edge 
    GCTGATTGAG GATGCTCACC ACCAAACCGC CGATGGTCGG AACAAGGATA 
    ACACGCAACC AATTGGAACC GATCGGTGCC TCTCTAAGCC ACGAAGCTCC 
    ACGATCAGGA ATCCCATCCC ACGAAAAGTC TCGAAGCAAG TGAACACAGT 
    TGTTGAATAG AACCACACTA ACTC

AT4G35440.1

Model type
Protein coding
Short Description
chloride channel E
Curator Summary
Enclodes a choride channel protein that is localized to the thlakoid membrane.
Computational Description
chloride channel E (CLC-E); FUNCTIONS IN: ion channel activity, voltage-gated chloride channel activity; INVOLVED IN: chloride transport, transmembrane transport; LOCATED IN: chloroplast thylakoid membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chloride channel, core (InterPro:IPR014743), Chloride channel, voltage gated (InterPro:IPR001807), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: chloride channel F (TAIR:AT1G55620.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G35440.2

Model type
Protein coding
Short Description
chloride channel E
Curator Summary
Enclodes a choride channel protein that is localized to the thlakoid membrane.
Computational Description
chloride channel E (CLC-E); FUNCTIONS IN: ion channel activity, voltage-gated chloride channel activity; INVOLVED IN: chloride transport, transmembrane transport; LOCATED IN: chloroplast thylakoid membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chloride channel, core (InterPro:IPR014743), Chloride channel, voltage gated (InterPro:IPR001807), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: chloride channel F (TAIR:AT1G55620.2).
Link
InterPro Scan - TAIR

AT4G35450.1

Model type
Protein coding
Short Description
ankyrin repeat-containing protein 2
Curator Summary
Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.
Computational Description
ankyrin repeat-containing protein 2 (AKR2); INVOLVED IN: in 6 processes; LOCATED IN: integral to chloroplast outer membrane, nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat-containing 2B (TAIR:AT2G17390.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G35450.2

Model type
Protein coding
Short Description
ankyrin repeat-containing protein 2
Curator Summary
Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.
Computational Description
ankyrin repeat-containing protein 2 (AKR2); INVOLVED IN: in 6 processes; LOCATED IN: integral to chloroplast outer membrane, nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat-containing 2B (TAIR:AT2G17390.1); Has 85365 Blast hits to 29004 proteins in 1328 species: Archae - 144; Bacteria - 6951; Metazoa - 44906; Fungi - 6142; Plants - 3755; Viruses - 871; Other Eukaryotes - 22596 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G35450.3

Model type
Protein coding
Short Description
ankyrin repeat-containing protein 2
Curator Summary
Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.
Computational Description
ankyrin repeat-containing protein 2 (AKR2); INVOLVED IN: in 6 processes; LOCATED IN: integral to chloroplast outer membrane, nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat-containing 2B (TAIR:AT2G17390.1); Has 85365 Blast hits to 29004 proteins in 1328 species: Archae - 144; Bacteria - 6951; Metazoa - 44906; Fungi - 6142; Plants - 3755; Viruses - 871; Other Eukaryotes - 22596 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G35450.4

Model type
Protein coding
Short Description
ankyrin repeat-containing protein 2
Curator Summary
Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.
Computational Description
ankyrin repeat-containing protein 2 (AKR2); INVOLVED IN: in 6 processes; LOCATED IN: integral to chloroplast outer membrane, nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat-containing 2B (TAIR:AT2G17390.1); Has 85180 Blast hits to 28957 proteins in 1321 species: Archae - 144; Bacteria - 6924; Metazoa - 44765; Fungi - 6138; Plants - 3756; Viruses - 866; Other Eukaryotes - 22587 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G35450.5

Model type
Protein coding
Short Description
ankyrin repeat-containing protein 2
Curator Summary
Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.
Computational Description
ankyrin repeat-containing protein 2 (AKR2); CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat-containing 2B (TAIR:AT2G17390.1).
Link
InterPro Scan - TAIR