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GT15235

CSHL Arabidopsis genetrap mutant lines

Original: GT15235

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15235

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10490645 [Map]; Strand: w
      • AT2G24660.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT15235 - 3-prime edge 
    GAGTATTTTA CCGACCGTTA CCGACCGTTT TCATCCCTAC AGAAAATGAA 
    ACATCAACAC GATAGAGAAA GTGTTCATCT CACTCGACCA AGTTNCTAAA 
    CCGGACGATT TTGCTGCACC AGAATCTGTT ACTAAACCGG ACGATTTTGC 
    TGAACCAGAA TCTGTTACTA AACCGGACGA TTTTGCTGAA CCAGAATCTG 
    TTACTAAACC GGACGATTTT GCTGAACCAG AATCTGTTTC TAAACCGGAC 
    GATTTCGCTG AACCAGATTC TGTTATTAAA CCGGACGATT TCACTGAATC 
    AAATTCTGCT CTTCAAACCG ACTCTGTTTT CGAACCAGAC TCTGATTCCG 
    ACGTGGCACC TGCTTCTATT GCTTCCGATT TACAAAATTC ACGAGTTGAT 
    TCATCTGATT CATCGACCCC GGATAAGAAT CTTGCTTCTG GTGATAC

AT2G24660.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.7e-166 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element)
Link
InterPro Scan - TAIR