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GT15246

CSHL Arabidopsis genetrap mutant lines

Original: GT15246

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15246

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22372715 [Map]; Strand: c
      • AT1G60780.1 - [+] show detail - Clathrin adaptor complexes medium subunit family protein
        Distance: -556; Region: promoter
    Flanking Genome Sequence: GT15246 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCAACA TTTGATCATT CTCCATTATA 
    GTATTCTAGT TCGCTATATA AAATTTCAAT AAAACACTGC AACATGAATT 
    GTTTTGTAAC ATGAAATTGT GAATTTGTGA TGTTACCGGT GTGAGTGCAT 
    TCGTTGTATG GATTGATTAG TACTATTGCA TACTTTGTGT GATTGATTGG 
    AACACAATGG AAGCGTAATT GAAAGTAATA TATTTCGAAC CTTTCTAAAC 
    CATGTAGTTA ACTTGAAGCT TATTCAAGTA CTTTATTACT TTCAAACTTG 
    ATATTTTGTT ACATAGCTAG TTTGGCTCTT AAGTTCTCAC CAAAGATTAT 
    GGGATCTTAA TGCAGATATA TACCCCCTTA TATATCCACA TGATATGAGT 
    ATATCTCAAT TTTATGGCTT TATTGAATGA CAATTTTATC TGTAATCTGC 
    CACTATCTTA GTCTTTTATA AAAACTATAT ATATGCATCT TCTTGTTCTG 
    TAATTCATAG GGCAATGGTC ATTCAATACT CGGAGCTTAA CTAATATAGA 
    GATCGCCTTA T

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 374787 [Map]; Strand: c
      • AT4G00890.1 - [+] show detail - proline-rich family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15246 - 5-prime edge 
    CCTACTTTCT CCCTGGACTC ACTACCTATA CCACCTCCAC AAGAAGCCAA 
    AACTCCGCCG TCTTCGCCGT CAATGATGTT AAACGCTACT GAAGAATTCG 
    AGTCCCAACC GAAACCACCG CTTTTGCCGT CTAAATCCAT AGACGAAACT 
    CGGCTCCGAT CACCGCTTAT GTCGCAAGCA TCGTCTCCAC CTCCTTTGCC 
    GTCTAAATCC ATTGATGAAA ATGAAACAAG GTCCCAATCA CCGCCGATTT 
    CGCCGCCCAA ATCTGATAAA CAAGCAAGAT CTCAGACACA CTCATCACCA 
    TCACCACCGC CACTGTTGTC GCCGAAAGCT AGTGAAAACC ACCAATCTAA 
    ATCACCTATG CCACCACCAT CTCCGACGGC ACAGATATCA CTATCGTCTC 
    TGAAATCACC AATTCCTTCT CCAGCTACGA TCACCGCACC AGCGCCGCCG 
    TTTTCTTCAC CACTCTCCCA AACTACACCG TCACCTAAAC CATCGTTACC 
    CCGAATTGAA CCAAACCAAA TCAAATCTCC TTCTCCAAAA CTCACAAACA 
    CCGAATCTCA CGCTTCACCA GAGCAGAATC TAGTGAAACC TGACGCCAAC 
    CTCATGAACA AGATTCCGGC TAAAAACGAA GTTCCGAAAA

AT1G60780.1

Model type
Protein coding
Short Description
Clathrin adaptor complexes medium subunit family protein
Computational Description
HAPLESS 13 (HAP13); INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: clathrin vesicle coat, clathrin adaptor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, conserved site (InterPro:IPR018240), Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968), Clathrin adaptor, mu subunit (InterPro:IPR001392), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: Clathrin adaptor complexes medium subunit family protein (TAIR:AT1G10730.1); Has 2206 Blast hits to 2139 proteins in 330 species: Archae - 0; Bacteria - 0; Metazoa - 1107; Fungi - 506; Plants - 213; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00890.1

Model type
Protein coding
Short Description
proline-rich family protein
Curator Summary
Encodes a putative glycosyl hydrolase family 10 protein (xylanase).
Computational Description
proline-rich family protein; Has 74402 Blast hits to 44432 proteins in 1604 species: Archae - 100; Bacteria - 7075; Metazoa - 32308; Fungi - 16616; Plants - 5983; Viruses - 2030; Other Eukaryotes - 10290 (source: NCBI BLink).
Link
InterPro Scan - TAIR