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GT15247

CSHL Arabidopsis genetrap mutant lines

Original: GT15247

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15247

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 374845 [Map]; Strand: c
      • AT4G00890.1 - [+] show detail - proline-rich family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15247 - 3-prime edge 
    CGGTAGAGGT TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGTTGAG 
    TTTCATCACC AGTTTCTGTT AATGTTGGAG GCGATGGTCG GAACCAAGTT 
    TCAACGATAG ATTCAAGCGG TGGAGACGGT TGGGACTGAG ATTCTTTGGT 
    AGCCTTTAGC GTTGGAGAGG GGGACAATGG TGTTTTTGGT TCTGTTGTTA 
    GCGGTCGAAG AGGCACTGAT GCTAGAAATT GCTGCTGAGA TTTAGTGGAT 
    ACTGGCGGCG ACTTAGGTGG TGATTGGATA AGTAGATTTC GATTTGTTTT 
    GACATGTTTT GACATCAGTG GTGTCATTGG CTGCGATTGA GGCTCTTCCT 
    TTGATTTTGG TGATAACGGC GACAAGGGTA AAGACTTTGG TTCCGGTGGT 
    GATTGTGGAT GAAATAGCGG TGACTGTGGT GGTGATTGAG ACAAAGTGTC 
    TTGAAGAGTC CTTCGTGGGG GTTGGCTGCT GACGCTTTGC CGCAGTTGGA 
    CAAGTCTAGC TAAGTTTCCT AACCGGAATC TCCGGCGAGA TTGTCGATTA 
    TTAAACATTA GTGTTATATT CTCATAAACT ATTTAGAAAT GTATGCATAT 
    GTTTGGCTAA AATAGATATG AACGAGAGGA GACAACTTTA ACATACACGA 
    AACATACCTT CTTGAGACTA AGTATATTGG TAACAGAAAG AAAAGTATCG 
    GATTCACCTT TTATGTCATT TCACAAATCA C

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 374787 [Map]; Strand: c
      • AT4G00890.1 - [+] show detail - proline-rich family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15247 - 5-prime edge 
    CCTACTTTCT CCCTGGACTC ACTACCTATA CCACCACCAC AAGAAGCCAA 
    AACTCCACCG TCTTCGCGCG TCAATGATGT TAAACGCTAC TGAAGAATTC 
    GAGTCCCAAC CGAAACCACC GCTTTTGCCG TCTAAATCCA TAGACGAAAC 
    TCGGCTCCGA TCACCGCTTA TGTCGCAAGC ATCGTCTCCA CCTCCTTTGC 
    CGTCTAAATC CATTGATGAA AATGAAACAA GGTCCCAATC ACCGCCGATT 
    TCGCCACCAA AATCTGATAA ACAAGCAAGA TCTCAGACAC ACTCATCACC 
    ATCACCACCG CCACTGTTGT CGCCGAAAGC TAGTGAAAAC CACCAATCTA 
    AATCACCTAT GCCACCACCA TCTCCGACGG CACAGATATC ACTATCGTCT 
    CTGAAATCAC CAATTCCTTC TCCAGCTACG ATCACCGCAC CAGCGCCGCC 
    GTTTTCTTCA CCACTCTCCC AAACTACACC GTCACCTAAA CCATCGTTAC 
    CCCAAATTGA ACCAAACCAA ATCAAATCTC CTTCTCCAAA ACTCACAAAC 
    ACCGAATCTC ACGCTTCACC AGAGCAGAAT CTAGTGAAAC CTGACGCCAA 
    CCTCATGAAC AAGATTCCGG CTAAAAACGA AGTTCCGAAA AACAGGGGAA 
    CATTAGAGAA AAAAACAGAG CCAATGATTA TGATGTTCAT AAACAGTAAC 
    GTCCAAGGAT TCAACACTTC TCTTTCGCTT G

AT4G00890.1

Model type
Protein coding
Short Description
proline-rich family protein
Curator Summary
Encodes a putative glycosyl hydrolase family 10 protein (xylanase).
Computational Description
proline-rich family protein; Has 74402 Blast hits to 44432 proteins in 1604 species: Archae - 100; Bacteria - 7075; Metazoa - 32308; Fungi - 16616; Plants - 5983; Viruses - 2030; Other Eukaryotes - 10290 (source: NCBI BLink).
Link
InterPro Scan - TAIR