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GT15252

CSHL Arabidopsis genetrap mutant lines

Original: GT15252

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15252

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 9245374 [Map]; Strand: w
      • AT5G26340.1 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT15252 - 3-prime edge 
    ATGAAACGGT AGAGGATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA 
    CATGCCTACG TCTTATATAG TCGCAAACAA AATTTTCTCC GGCATTGACT 
    TTTAATGCGT TATGATGATC TGTCACCTGT AATTAATGGG CTTACGTGTA 
    GGCCCATAAC GGAGTTAAAA ACTGGCCCAC TAAATAAATT TTGAAATGTT 
    CGCAGGATTA AAGGAGGTTG GGGATGGAGG TTATCGTTAG GTTTGGCGGG 
    AATTCCCGCG CTTCTTCTAA CGGTCGGAGC TTTATTGGTG ACAGAGACAC 
    CAAACAGTTT AGTCGAAAGA GGTCGTCTCG ATGAAGGTAA AGCTGTTCTT 
    CGTCGTATTC GAGGGACCGA TAATGTTGAA CCAGAGTTCG CTGATCTCCT 
    TGAAGCTAGT CGACTTGCTA AAGAAGTTAA ACACCCTTTT AGAAACCTTC 
    TTCAACGTAG AAACCGTCCT CAGCTCGTCA TCGCCGTCGC TTTACAGGTT 
    AGTACTACCA CTTCTCTGTT CTCTCGTAAT TGGTAATCGG AAAAGTTTAT 
    CTCCGATTTG GAGAGTTTGA CTGAAGTGAT TTTGTTTTTC GTTTAGGATC 
    TAGAAACCCT AAAATTTGAT TC

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 9238043 [Map]; Strand: w
      • AT5G26320.1 - [+] show detail - TRAF-like family protein
        Distance: -267; Region: promoter
    Flanking Genome Sequence: GT15252 - 5-prime edge 
    CTTTCTCCCT GGACAGAGGC ACAATATAGT CCTTCATATT GCCCAATTAA 
    CGTGTATTGT AACCACACCT GATACCACCC TTTACATAAT GTAAGAGGTT 
    TGACTTAAAC ATTTTAACAA TATTTTGAAC ATTATGCTGC TCACGTCTAA 
    TCTGATACTT GACACATTCC AAGTCGACCA AAAGTAATAA TAATGAATGT 
    GTAGAAATAT ACATATTTTT CCACCATATG GATCCACTTT CAGTATTATA 
    TAGTAGTAAC GAAACTCATT AAATAAGTAA CTCTGTTTCT ATATATATGT 
    AATGCATTTC CCAAAAAATT GAAAAACCAT ATGAGAAAAT GGATTATCAG 
    AAATGGAG

AT5G26320.1

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT5G26280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G26340.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Curator Summary
Encodes a protein with high affinity, hexose-specific/H+ symporter activity. The activity of the transporter appears to be negatively regulated by phosphorylation. Importantly, microarray analysis, as well as the study of the expression of this gene in mutants involved in programmed cell death (PCD) demonstrated a tight correlation between this gene's expression and PCD.
Computational Description
MSS1; FUNCTIONS IN: carbohydrate transmembrane transporter activity, high-affinity hydrogen:glucose symporter activity, sugar:hydrogen symporter activity, hexose:hydrogen symporter activity; INVOLVED IN: response to salt stress, apoptosis, phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter protein 7 (TAIR:AT4G02050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR