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GT15258

CSHL Arabidopsis genetrap mutant lines

Original: GT15258

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15258

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23306269 [Map]; Strand: c
      • AT5G57550.1 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 25
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15258 - 5-prime edge 
    CGTCTCGACT ACGACCCTCT TCTCTCCGGT TTTCGCAGGA ACGTTCGACA 
    CAGAATTCGA TATCACTTGG GGTGATGGTC GTGGCAAGGT TCTTAACAAC 
    GGAGAGCTTC TCACTCTCTC CCTCGACAGA GCCTCCGGCT CTGGTTTTCA 
    AACCAAGAAA GAGTATTTGT TCGGGAAAAT CGACATGCAG CTCAAACTCG 
    TCCCTGGAAA CTCCGCCGGA ACCGTCACTG CCTACTACGT TAGTGTTACT 
    TAACATCATA ACATATATAA CATGGCCGTT TTTAGAATAA CGTGTGGAAA 
    GCTCCAATTA AAAAAATTCT TTCTTAAAGG ATAAATTTTT GAATATTTCC 
    TATTTCCTAA AGAAAAATTA TCAACAGAGA TTCTTAAATA ATTTGAGACG 
    GTCATATACG ATGTTACTAA CTTACCATGT GAAATTTTTA TTATTTGGAT 
    ATTAATTAGA ACAGTTTGTG ATTGTGTTTA ATTTTCCATG CAGTTGAAGT 
    CAAAAGGTGA TACGTGGGAC GAAATCGATT TCGAGTTTCT TGGTAATCTA 
    ACTGGTGATC CGTATACCAT GCATACGAAT GTGTATACT

AT5G57550.1

Model type
Protein coding
Short Description
xyloglucan endotransglucosylase/hydrolase 25
Curator Summary
xyloglucan endotransglycosylase-related protein (XTR3)
Computational Description
xyloglucan endotransglucosylase/hydrolase 25 (XTH25); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: plant-type cell wall biogenesis; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglycosylase 6 (TAIR:AT4G25810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR