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GT15259

CSHL Arabidopsis genetrap mutant lines

Original: GT15259

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15259

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22372715 [Map]; Strand: c
      • AT1G60780.1 - [+] show detail - Clathrin adaptor complexes medium subunit family protein
        Distance: -556; Region: promoter
    Flanking Genome Sequence: GT15259 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCACA TTTGATCATT CTCCATTATA 
    GTATTCTAGT TCGCTATATA AAATTTCAAT AGAACACTGC AACATGAATT 
    GTTTTGTAAC ATGAAATTGT GAATTTGTGA TGTTACCGGT GTGAGTGCAT 
    TCGTTGTTGG ATTGATTAGT ACGATTGCAT ACTTTGTGTG ATTGATTGGT 
    ACACAATGGA AGCGTAATTG AAAGTAATAG ATTTCAAACC TTTCTAAACC 
    ATGTAGTTAA CTTGAAGCTT ATTCAAGTAG TTTATTACTT TCAAACTTGA 
    TATTTTGTTA CATAGCTAGT TTGGCTCTTA AGTTCTCACC AAAGATTATG 
    GGATCTTAAT GCAGATATAT ACCCCCTTAT ATATCCACAT GTTATGAGTA 
    TTTCTCAATT TTTTGGCTTT ATTGGATGAC TATTTTATCT GTTTTCTGTG 
    ACTATCTTAG TCTTTTATAA ATACTATATA TATGCATCTT CTTGTTCTGT 
    AATTCATAGG GCAATGGTAA TTCAATACTC GGAGCTTAAC TAATATAGGA 
    T

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22372439 [Map]; Strand: c
      • AT1G60780.1 - [+] show detail - Clathrin adaptor complexes medium subunit family protein
        Distance: -280; Region: promoter
    Flanking Genome Sequence: GT15259 - 5-prime edge 
    TATAAAACCC CCCAACACAT AAGGTCCCAA TGAATGATTT CAATTCTCTA 
    TCTTATTGAC ACATAAACAT GGACCGGTCC ACTTTCATCT CACTCGACTA 
    CCCTAAAGTT TTTGCGAACA AAGCATATAT TCGATTTTAG GGTTTTACTT 
    CTATCATTGA TTAAGAAACC TATTTTTATA CTACTTATCG TTAACCTAAT 
    AATTTTAACC TACGAAACCT ATCTCTATAT GGGCCTGACT TTATATAATG 
    ACCCAATGGG CCTTTCTTCT TTAATGATGA CTTTCTTCGT TCACTCTCCT 
    TCTTCTAGAC TTCTACTTTC GATGGTATTA AATTTGACGG AAAAAGTAAA 
    ACGGTGTCGT CTGGGTGAAA CGCAGAGCTC TTTGCTTCTG AATATTATTA 
    TTTTCTTAAA TTCTTCCGTT TTTTTTTAAT CCA

AT1G60780.1

Model type
Protein coding
Short Description
Clathrin adaptor complexes medium subunit family protein
Computational Description
HAPLESS 13 (HAP13); INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: clathrin vesicle coat, clathrin adaptor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, conserved site (InterPro:IPR018240), Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968), Clathrin adaptor, mu subunit (InterPro:IPR001392), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: Clathrin adaptor complexes medium subunit family protein (TAIR:AT1G10730.1); Has 2206 Blast hits to 2139 proteins in 330 species: Archae - 0; Bacteria - 0; Metazoa - 1107; Fungi - 506; Plants - 213; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).
Link
InterPro Scan - TAIR