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Mutant Lines
GT15272

GT15272

CSHL Arabidopsis genetrap mutant lines

Original: GT15272

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15272

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence
1. Chromosome: 3; Position: 23004501 [Map]; Strand: w
  - AT3G62120.1 - [+] show detail - Class II aaRS and biotin synthetases superfamily protein
    Distance: -180; Region: promoter
  - AT3G62120.2 - [+] show detail - Class II aaRS and biotin synthetases superfamily protein
    Distance: -209; Region: promoter
  - AT3G62130.1 - [+] show detail - Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
    Distance: -430; Region: promoter
Flanking Genome Sequence: GT15272 - 3-prime edge
```
AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAGT 
TCGACTGCGA AACTGGATTA GAATATAAAT CCATCTTTTC TCCACAACTA 
TAGTATAAAT AATTAATGCA TCGATCGTTG ACTTATTGGG CTTGGCCCAT 
GTAAACTAAG CATTTAGGCA AAAACCAGAT CCAACCCTAA CACGTGGCCG 
TATATAATTG GAAGTTCAGT AACAAAGCTC GTCAAGCGAG TCAAACGTTC 
GCAACTTGTA ACGCTATTTT GCTCTCTCGA TTCCTTTCTC TCTTCTCTTA 
TCTTTGCTGC TTCTTTTGCT CCGCCGTCTT
```

5 prime edge [+] show sequence

Chromosome: 3; Position: 4675517 [Map]; Strand: c
- AT3G14100.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
  Distance: 0; Region: exon11 (CDS)

CTTTCTCCCT GAGAGTGGTA AGCCAAACTT AAAAGTACCT TTATCTGTCT 
GTTAAAGAGG TAAGGCTGAG TGTTACCCAT CTGAATAGCA AGAGCAGCTT 
CGGGATGAGT GTTATATCTC ACGAAACCAA AGCCTTTGTC TCGTTGGACA 
CGGACCTCCT CAATAACTCC AGCGCCAAGA GCATGGAAGT AACGGTGTAG 
ATCAAGCTGA GTTACCTGCA AGATAGATAG CTGTAACGAT GTACCCGAAA 
TCTACTAATG TAAAACTTCA TCAAAGAACC TCAAATAAAC TGTTTTTGTT 
GTGATAGTAT TACAAGGAGC ACTTCCTAGT GGATAATGTA CCTCTGGAGC 
AAGGTTTCCC ACATAAACAG TGGTAAACTG AGAATTATTT TCAGGTGTTT 
CCTCATTTAA TGTCTCTTTA CCATCCTCTG CACAATCAAA CGACCAATAT 
GGCTTTGTTA ACTTAAAGTT TTTCATATTA CTCAGGGAAA ATCAATGTAG 
GTTCGTAAAT TCCATTTGAG GAGAAGGAGA AAAAAACATA AGAATTTGCA 
CAGTAATAGA AAGACAACCT GATGAGCCAG TTGTAAGTTC CACAACACTT 
TTTCCATCAG AACTGAGCTT ATCATCACCA GAAGTAGCGC CCTTCGTGGC 
CCAGTTGCAT CTGATTTTGC TGCTACTTAA CCAC

AT3G14100.1

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: mRNA 3'-UTR binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: oligouridylate-binding protein 1A (TAIR:AT1G54080.1); Has 33134 Blast hits to 32894 proteins in 1695 species: Archae - 47; Bacteria - 3311; Metazoa - 12038; Fungi - 6892; Plants - 9686; Viruses - 3; Other Eukaryotes - 1157 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G62120.1

Model type: Protein coding
Short Description: Class II aaRS and biotin synthetases superfamily protein
Computational Description: Class II aaRS and biotin synthetases superfamily protein; FUNCTIONS IN: proline-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: prolyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Prolyl-tRNA synthetase, class IIa, prokaryotic-type (InterPro:IPR004499), Prolyl-tRNA synthetase, class II, C-terminal (InterPro:IPR016061), Anticodon-binding (InterPro:IPR004154), Prolyl-tRNA synthetase, class II (InterPro:IPR017449), Prolyl-tRNA synthetase, class IIa, conserved region (InterPro:IPR002316), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: Class II aaRS and biotin synthetases superfamily protein (TAIR:AT5G52520.1); Has 9240 Blast hits to 8990 proteins in 2633 species: Archae - 270; Bacteria - 6522; Metazoa - 295; Fungi - 194; Plants - 105; Viruses - 0; Other Eukaryotes - 1854 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G62120.2

Model type: Protein coding
Short Description: Class II aaRS and biotin synthetases superfamily protein
Computational Description: Class II aaRS and biotin synthetases superfamily protein; FUNCTIONS IN: proline-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: prolyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Prolyl-tRNA synthetase, class IIa, prokaryotic-type (InterPro:IPR004499), Prolyl-tRNA synthetase, class II, C-terminal (InterPro:IPR016061), Anticodon-binding (InterPro:IPR004154), Prolyl-tRNA synthetase, class II (InterPro:IPR017449), Prolyl-tRNA synthetase, class IIa, conserved region (InterPro:IPR002316), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: Class II aaRS and biotin synthetases superfamily protein (TAIR:AT5G52520.1); Has 9240 Blast hits to 8990 proteins in 2633 species: Archae - 270; Bacteria - 6522; Metazoa - 295; Fungi - 194; Plants - 105; Viruses - 0; Other Eukaryotes - 1854 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G62130.1

Model type: Protein coding
Short Description: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
Computational Description: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; FUNCTIONS IN: pyridoxal phosphate binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class V/Cysteine desulfurase (InterPro:IPR000192), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT5G26600.1); Has 4302 Blast hits to 4302 proteins in 1284 species: Archae - 105; Bacteria - 2583; Metazoa - 32; Fungi - 216; Plants - 120; Viruses - 0; Other Eukaryotes - 1246 (source: NCBI BLink).
Link: InterPro Scan - TAIR