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GT15287

CSHL Arabidopsis genetrap mutant lines

Original: GT15287

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15287

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 286159 [Map]; Strand: c
      • AT2G01650.1 - [+] show detail - plant UBX domain-containing protein 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15287 - 3-prime edge 
    TAGAGGTTTT TACCGACCGT TACCGACCGT TTTCTCCCCT GCATACATCC 
    GTGAACCTTT TGCTGATGAG GTTTGTGCCT TCATCTCCCT CGACGAATTG 
    GGTTTGGGTC TAGGAGTCGG ATTGGGAGCT TGGGAAGAGT TAAACCGGTT 
    CTGAATCGGG TTAACGGGTG GTGCAGAGGA AGAAGAAGAA GATCCGAGAA 
    CCCGACCTTG GCCTTTGAAT TTGCCGGAAG AAGTAGAGAG ATTGACTTTT 
    TTCGTGAAAC CCTTTAGCTT ATCTAAAACG TCATCCATAG TCTTCTTCTC 
    CGTGTAATCT CATGCTAAGG AAAAAGATAC CAACTTTATA AATTATA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 286064 [Map]; Strand: c
      • AT2G01650.1 - [+] show detail - plant UBX domain-containing protein 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15287 - 5-prime edge 
    CGGATCCTGA CCCGGTTCGT GCTCCACAAG ATGGGTTTGA CCCGTTCGGT 
    GCTTTGATAA CGTCTTCGAA CAGATCTCAG AATGGTTATT CTCTGAATAT 
    GTTTGAGTGT CCGATCTGTA AAAATCAATT CACGTCAGAG GAAGAAGTCT 
    CTGTTCAT

AT2G01650.1

Model type
Protein coding
Short Description
plant UBX domain-containing protein 2
Curator Summary
encodes a peripheral membrane protein that contains UBX domain and interacts with AtCDC48 in vitro and co-fractionates with membrane-associated but not soluble AtCDC48 in vivo.
Computational Description
plant UBX domain-containing protein 2 (PUX2); CONTAINS InterPro DOMAIN/s: PUB domain (InterPro:IPR018997), UBX (InterPro:IPR001012), PUG domain (InterPro:IPR006567); BEST Arabidopsis thaliana protein match is: ubiquitin-associated (UBA)/TS-N domain-containing protein (TAIR:AT1G04850.1); Has 563 Blast hits to 563 proteins in 115 species: Archae - 0; Bacteria - 15; Metazoa - 269; Fungi - 22; Plants - 176; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
Link
InterPro Scan - TAIR