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GT15317

CSHL Arabidopsis genetrap mutant lines

Original: GT15317

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15317

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1842898 [Map]; Strand: w
      • AT3G06100.1 - [+] show detail - NOD26-like intrinsic protein 7;1
        Distance: 0; Region: exon1 (CDS)
      • AT3G06110.3 - [+] show detail - MAPK phosphatase 2
        Distance: -515; Region: promoter
      • AT3G06110.1 - [+] show detail - MAPK phosphatase 2
        Distance: -574; Region: promoter
      • AT3G06110.2 - [+] show detail - MAPK phosphatase 2
        Distance: -581; Region: promoter
    Flanking Genome Sequence: GT15317 - 3-prime edge
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAGTCTCGA GTAGTCGACC 
    AAGAAGCTGG TTCAACTCCA TCTACTTTGA GAGATGAAGA TCATCCGTCG
    AGACAAAGGC TTTTCGGATG TCTCCCTTAT GATATAGATC TCAATCCCCT
    ACGCATTGTA AGCTTCATAT ATACACAAAA TCATAGAATC AACAAGATTA
    ATATCTCACA ATACTTTTGT GTTAAACTAA AGAATTGGCT ATGTCCATAA
    TTACAAATAA TTTTTTTGAA AATATTAAAA TGTTTGTATA GAAATAAAAT
    GCTAATTAAT AGTATCGCCG GACTAATGTT TAGGTAATGG CGGAATTGGT
    GGGGACATTC ATTCTAATGT TCAGTGTGTG TGGGGTCATA AGCAGTACCC
    AATTATCCGG CGGCCACGTG GGATTGCTAG AGTACGCCGT CACCGCTGGA
    TTATCTGTGG TGGTCGTAGT TTACTCCATC GGACACATCT CTGGCGCCCA
    TCTTAACCCT TCCATCACCA TTGCTTTCGC TGTCTTTGGC GGATTCCCGT
    GGTCTCAGGT ATAATGCATC CATCTCAACA CGGCGTTTGA CCAACTAAGA
    ATTGTAGTTG AATTATCTTG GTCTTGATCG TTTGTTTTTG TTTATCTTAA
    CGTTTAGACC AAGA
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1842977 [Map]; Strand: w
      • AT3G06100.1 - [+] show detail - NOD26-like intrinsic protein 7;1
        Distance: 0; Region: exon1 (5UTR)
      • AT3G06110.3 - [+] show detail - MAPK phosphatase 2
        Distance: -436; Region: promoter
      • AT3G06110.1 - [+] show detail - MAPK phosphatase 2
        Distance: -495; Region: promoter
      • AT3G06110.2 - [+] show detail - MAPK phosphatase 2
        Distance: -502; Region: promoter
    Flanking Genome Sequence: GT15317 - 5-prime edge
    CCTACTTTCT CCCGTGCCTC ACCATTCATC TTCTTAATTC CTTCAAGATA 
    TAGTGATCAA GAACTGAGGA AAGTCACAAT CAAGGTGGCT TGATCCGCTT
    TATGAATGAT CTAATGGAAC AAAAAAAAGA GATAGAGAGA AAAACGCAAA
    GAAGATGAAA ATTAAAGAGT AATAATTTTA TTTCAACAAA AAGAAGAATT
    AGAAGAGTGC TACATTCCTT TGGTTAAGCA GTCTGAAAGG AGAAGAGGGT
    GCTCAACACT TTTCTTGTGT TCAATTTTCA CTTCCTACCT ACCAATATTT
    CTTAATGTTA ATTTGGTGAT TTCTAAGTAA TCTATTTATT TTAATAATCT
    TCA

AT3G06100.1

Model type
Protein coding
Short Description
NOD26-like intrinsic protein 7;1
Computational Description
NOD26-like intrinsic protein 7;1 (NIP7;1); FUNCTIONS IN: water channel activity; INVOLVED IN: transport; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: NOD26-like intrinsic protein 4;1 (TAIR:AT5G37810.1); Has 10571 Blast hits to 10316 proteins in 2159 species: Archae - 111; Bacteria - 5379; Metazoa - 1383; Fungi - 439; Plants - 2077; Viruses - 4; Other Eukaryotes - 1178 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06110.1

Model type
Protein coding
Short Description
MAPK phosphatase 2
Curator Summary
Encodes a nuclear-localized MAP kinase phosphatase. Plants with reduced levels of MKP2 transcripts are hypersensitive to ozone and ozone-mediated activation of MPK3 and MPK6 is prolonged in these plants.
Computational Description
MAPK phosphatase 2 (MKP2); FUNCTIONS IN: MAP kinase phosphatase activity, protein tyrosine/serine/threonine phosphatase activity; INVOLVED IN: intracellular protein kinase cascade, response to ozone, negative regulation of MAP kinase activity, response to stress; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dual-specific/protein-tyrosine phosphatase, conserved region (InterPro:IPR000387), Dual specificity phosphatase, catalytic domain (InterPro:IPR000340), Dual specificity phosphatase, subgroup, catalytic domain (InterPro:IPR020422); BEST Arabidopsis thaliana protein match is: dual specificity protein phosphatase 1 (TAIR:AT3G23610.2); Has 4028 Blast hits to 4023 proteins in 348 species: Archae - 21; Bacteria - 87; Metazoa - 2101; Fungi - 442; Plants - 308; Viruses - 204; Other Eukaryotes - 865 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06110.2

Model type
Protein coding
Short Description
MAPK phosphatase 2
Curator Summary
Encodes a nuclear-localized MAP kinase phosphatase. Plants with reduced levels of MKP2 transcripts are hypersensitive to ozone and ozone-mediated activation of MPK3 and MPK6 is prolonged in these plants.
Computational Description
MAPK phosphatase 2 (MKP2); FUNCTIONS IN: MAP kinase phosphatase activity, protein tyrosine/serine/threonine phosphatase activity; INVOLVED IN: intracellular protein kinase cascade, response to ozone, negative regulation of MAP kinase activity, response to stress; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dual-specific/protein-tyrosine phosphatase, conserved region (InterPro:IPR000387), Dual specificity phosphatase, catalytic domain (InterPro:IPR000340), Dual specificity phosphatase, subgroup, catalytic domain (InterPro:IPR020422); BEST Arabidopsis thaliana protein match is: dual specificity protein phosphatase 1 (TAIR:AT3G23610.2); Has 4168 Blast hits to 4160 proteins in 377 species: Archae - 19; Bacteria - 125; Metazoa - 2129; Fungi - 477; Plants - 302; Viruses - 229; Other Eukaryotes - 887 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06110.3

Model type
Protein coding
Short Description
MAPK phosphatase 2
Curator Summary
Encodes a nuclear-localized MAP kinase phosphatase. Plants with reduced levels of MKP2 transcripts are hypersensitive to ozone and ozone-mediated activation of MPK3 and MPK6 is prolonged in these plants.
Computational Description
MAPK phosphatase 2 (MKP2); CONTAINS InterPro DOMAIN/s: Dual-specific/protein-tyrosine phosphatase, conserved region (InterPro:IPR000387), Dual specificity phosphatase, catalytic domain (InterPro:IPR000340), Dual specificity phosphatase, subgroup, catalytic domain (InterPro:IPR020422); BEST Arabidopsis thaliana protein match is: dual specificity protein phosphatase 1 (TAIR:AT3G23610.2).
Link
InterPro Scan - TAIR