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GT15355

CSHL Arabidopsis genetrap mutant lines

Original: GT15355

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15355

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1418775 [Map]; Strand: c
      • AT2G04170.1 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: intron1 (CDS)
      • AT2G04170.2 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: intron2 (CDS)
      • AT2G04170.3 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: intron2 (5UTR)
      • AT2G04170.4 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: exon2 (5UTR)
      • AT2G04170.5 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT15355 - 5-prime edge 
    ACTTTCTCCC TGGTTGTGGC TCAGGGACAG GCGGCGGAAA TCAGGGGCAA 
    GGAGGTGGTT AAACACTAAA ACCAGTTTCT TGATTTTCTT GGAATTTTTT 
    TTTTTGGATC CCCTTTTTTA CCGGGATGAC CGGAATGGGG AAAAATTGCC 
    CCCCCTTCAA AAAAAATCCG GAAAAAACCA GTTTCCCCCG GGACCAAGGG 
    GAGGGAAAAC CCCAACAAAC CCCGGGTTTT GGGGGCGGGG GGTACCAAGG 
    GGAAAAAACC CCCCCTCCCT TGGTTTTTTC CCCTTTCCAA AAAAAATTTG 
    GATTTTTTTT GGGGGGAACC AAAAAAAGGA TCCGGGAATT TATTTTGGTT 
    GGTAAAGGGA AACCAAACCA AGGGGGAAAA AACCCTTTTT CCCTTTTCCG 
    GGGGGACCAA AAAACCAAAT CCTCTCCCAA AGGGGGGGAA AGCCAAGGTG 
    AACCCCAACC CTTTTGCCAC CAGGGGAAAC CACCCCAGGT TTTTATTGGT 
    AAAGGGGGGA CCGGAAAATT CCAAAAATTG GCCTAACCTT TTCCAAAAAC 
    CCAAAAATTG AATGGGACCT GCCAGGTTTT GCCAAAATGG GG

AT2G04170.1

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT5G26280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G04170.2

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT5G26280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G04170.3

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT5G26280.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G04170.4

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT5G26280.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G04170.5

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT5G26280.1); Has 40157 Blast hits to 13977 proteins in 907 species: Archae - 22; Bacteria - 17141; Metazoa - 12439; Fungi - 1936; Plants - 3869; Viruses - 495; Other Eukaryotes - 4255 (source: NCBI BLink).
Link
InterPro Scan - TAIR