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GT15362

CSHL Arabidopsis genetrap mutant lines

Original: GT15362

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15362

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30342107 [Map]; Strand: c
      • AT1G80740.1 - [+] show detail - chromomethylase 1
        Distance: -287; Region: promoter
    Flanking Genome Sequence: GT15362 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAGCT 
    CGGAGTTGAG ATTCTCCCGC TCACTCCAAA AGATATCCAA AACTTGGAAA 
    TTAATTTTAT TTCCTCTTTA ATTTCTCCAT AATTCGAAAA ATTGATTTTA 
    TTTCCTAAAG TTTTCTCATT AATTGTTTGT TACACTCCAC AACGCTTTTT 
    TTATTTTCTC CATAATTTGG AATTGATTTT ATTTCCTAAA ATTTAACATT 
    AATATATTTG CTCCACTAGT CACGACTAGT ACATATAGAC CTCGTCTCTG 
    CAACGCTTCA TCTTTTACTT GCTCGTCTTC TCTGGAAAAA TGGCAGCGAG 
    AAACAAACAA AAGAAACGCG CTGAGCCAGA GTCAGATCTG TGCTTCGCTG 
    GCAAACCAAT GTCTGTTGTG GAGTCAACAA TTCGATGGCC TCATCGCTAC 
    CAATCCAAGA AAACAAAGCT CCAAGCTCCG ACCAAAAAAC CTGCAAATAA 
    GGGGTATAAC TTTACCGGGG TTTGTCTCTT TTATGATTTT GTTGCTTACC 
    TTCTGTTCGC TGATTTTGTT TTACA

AT1G80740.1

Model type
Protein coding
Short Description
chromomethylase 1
Curator Summary
ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation.
Computational Description
chromomethylase 1 (CMT1); FUNCTIONS IN: chromatin binding, DNA binding; INVOLVED IN: DNA mediated transformation, DNA methylation; LOCATED IN: chromatin, nucleus; CONTAINS InterPro DOMAIN/s: Chromo domain subgroup (InterPro:IPR017984), DNA methylase, C-5 cytosine-specific (InterPro:IPR001525), Chromo domain-like (InterPro:IPR016197), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: chromomethylase 3 (TAIR:AT1G69770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR