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GT15396

CSHL Arabidopsis genetrap mutant lines

Original: GT15396

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15396

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 13833613 [Map]; Strand: c
      • AT5G35630.2 - [+] show detail - glutamine synthetase 2
        Distance: 71; Region: intergenic
      • AT5G35631.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 95; Region: intergenic
    Flanking Genome Sequence: GT15396 - 3-prime edge 
    AAACGGTAGA GGTTTTTACC GACCGTTACC GACCGTTTTC ATCCCTAGAT 
    TCCGGCGAGA TAGTTGAGGA AGAAAGCGGC GAAACTCTTG AGGAAGATGG 
    GGAATTGAAG CCAATGAAGG ATTACATGGA TCTCTTCTCA CAAACAAAGA 
    AACCGTCGGT GAATGATTTT GCAAGGAGTT TCTTTTCGGC GGCGGAGGAC 
    GACCACAACC TAAAATCGAC ACTGACCCGA GATTCTCTTC ATGGCCGTCT 
    TTATTAAAGT TGTGGCCAGT GTTAACCGGA GTCGAGCCTT TGTCATCATT 
    GTATTGTTGG GTAAGGAAAA CTAACCTCTT AATGTCTTCT TCTTCTGCAA 
    GTTCGTGTTT TGATCTCATA TATCCTTAGT TTAAATCTAG GTTTTGTTTG 
    TGAAGAAGAG GAGGAAACTG TGACAAGTAA GGGTTTTGTA GACTAACTTC 
    CCGTTGAACC AAAGAGAGTA AGATCGATAA TTTGACGTCT CTGGATAGAT 
    CTTTCTGCAA GGAATCCATA GAAATTTACG GTTTATTAAA CGGACGTATA 
    TTGCAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 13719882 [Map]; Strand: c
      • AT2G32295.1 - [+] show detail - EXS (ERD1/XPR1/SYG1) family protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: GT15396 - 5-prime edge 
    CTTTCTCCCT GCCGGAATCT TTCTCAGAGT GGCCACTGTT TTCTTCTTCC 
    TCCTCAATTT CAGCTTCTTC AGTCACCTGT AAAACCATTG ATATAAAGAA 
    AAATTTGATG ATATGGAACA ATCAGCGAGA ATCTAAGAAC TTTGAGTAAA 
    TGAATAAGAC CTTGAGACTT CGAAGGAATA TAGGAGTCTG CAATTTCGCA 
    TTAAGTACTC AGAAGCATAC TTGCGGTCTT CAAGTCATTA TATCATGTCC 
    AATACCACAA ACCATCCAGA AAAAGTAATT AAAATCGCTA AGCAGAAACT 
    ATTTTTTTCT CATTTTTTTG TTATTTGCAG AGATTCTGTT AAATTTCAAG 
    AAAACATGAA CCACAACGAG TTTGAGTTTA CCGGCGGTGA AGTTCCGTTA 
    ATAACCGGAG AATATTTTAT TGTCGACCCT TTAGCTGCGA AAGCCAACTT 
    CAACAAAGCA GAAACGATGG TCTCAGTTAC AATTTCACT

AT2G32295.1

Model type
Protein coding
Short Description
EXS (ERD1/XPR1/SYG1) family protein
Computational Description
EXS (ERD1/XPR1/SYG1) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: EXS, C-terminal (InterPro:IPR004342); BEST Arabidopsis thaliana protein match is: EXS (ERD1/XPR1/SYG1) family protein (TAIR:AT5G35730.1); Has 838 Blast hits to 834 proteins in 189 species: Archae - 2; Bacteria - 0; Metazoa - 243; Fungi - 250; Plants - 230; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G35630.2

Model type
Protein coding
Short Description
glutamine synthetase 2
Curator Summary
chloroplastic glutamine synthetase
Computational Description
glutamine synthetase 2 (GS2); FUNCTIONS IN: glutamate-ammonia ligase activity; INVOLVED IN: in 8 processes; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine synthetase, catalytic domain (InterPro:IPR008146), Glutamine synthetase, beta-Grasp (InterPro:IPR008147), Glutamine synthetase/guanido kinase, catalytic domain (InterPro:IPR014746); BEST Arabidopsis thaliana protein match is: glutamine synthase clone F11 (TAIR:AT1G66200.1); Has 8236 Blast hits to 8234 proteins in 2572 species: Archae - 144; Bacteria - 3324; Metazoa - 415; Fungi - 259; Plants - 1746; Viruses - 3; Other Eukaryotes - 2345 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G35631.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR