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GT15565

CSHL Arabidopsis genetrap mutant lines

Original: GT15565

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15565

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14676534 [Map]; Strand: c
      • AT2G34790.1 - [+] show detail - FAD-binding Berberine family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT15565 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTACCAAATG 
    GCAATAGGCA AATAGGCAAT GGGCAAAAAC TTCCGTTACT ATTTGGAGTC 
    AAAATATTGC GAATAAGTTC TAACCAAATA AAATCAGTAA TTATCATCCT 
    ACTTAAAAAT TAAAGAATAA TCTCGCCATA AAAAATTATG CGTCAAATTA 
    ATTTGTTTTT ACTATTCAAA AATCTGACCA AGGAAATATA TATATATAAT 
    CGTGCGTAAG CGTTACCTGT AATAAACCTC TCCGATGGTA GCACCAGCAT 
    GAGCCCACGC ACTGTTACTG TCCAAATCAA CGTCAAACTG TCTAAGCTTC 
    GACAAATCAA CGATCACAAA CGGGGTTTCG TCCTCGGCAA CAAACGAGAG 
    CCCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 181483 [Map]; Strand: c
      • AT5G01440.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Insulinase (Peptidase family M16)...
        Distance: 162; Region: intergenic
      • AT5G01445.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 394; Region: intergenic
    Flanking Genome Sequence: GT15565 - 5-prime edge 
    CTTTCTCCCT GCATTCAGTA TCCATGAGGA TTTCGTCGGA TTTTTTGTCA 
    TGTAAAATAA ATCAAAGATA GGTGATGTTA TTATTGGGCC CATCAAAACA 
    AGTCTCGTTT TGCAAGCAAA GTAGTTGATT TGTCGTATCC TTACTTGTGC 
    AACAAGATGA ACTTGGATGA AGAATTAAAA AATGGTCTTG GAGTTGCTGC 
    ATTTTGATTG TCTGATTCAG ATTAACGAGA ACCTTATATG GTTGGCCATG 
    AAGGTCTCGC TGCTTCGATC TTCACCTTTT CGATTCGTTG CTCTGCTACT 
    GTAATCCAAG ATTTCGGATT TCCAGAGCTT TTATTTATAA ATGCCGTACC 
    TGTGTAACCA CCGTCTCGGC AATCCATGGC CTTTTTAATG ACACATAGTT 
    TCTTGCCTCG GCATAGTTCA GTGTCTGTCT TACTCTCATT AGCTTGTAAA 
    AGGATTCCAT TTTTTTTGCA ACTAGCATAA GTAATGATGT GT

AT2G34790.1

Model type
Protein coding
Short Description
FAD-binding Berberine family protein
Computational Description
MATERNAL EFFECT EMBRYO ARREST 23 (MEE23); FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; INVOLVED IN: polar nucleus fusion, embryo development ending in seed dormancy; LOCATED IN: cell wall; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G30760.1); Has 4988 Blast hits to 4831 proteins in 776 species: Archae - 82; Bacteria - 2407; Metazoa - 5; Fungi - 1644; Plants - 646; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01440.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: Insulinase (Peptidase family M16) family protein (TAIR:AT1G06900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01445.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR