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GT15568

CSHL Arabidopsis genetrap mutant lines

Original: GT15568

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15568

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 4525706 [Map]; Strand: c
      • AT2G11345.1 - [+] show detail - transposable element gene
        Distance: -2409; Region: intergenic
      • AT2G11350.1 - [+] show detail - transposable element gene
        Distance: -1274; Region: intergenic
    Flanking Genome Sequence: GT15568 - 3-prime edge
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CAATGTAAGA ACATATCGCC 
    AGGAAAGGAG ACCTCATTTT AATTAACCAG AAAGAACTTT CGAAAAAGGT
    TTTTTTAAAA ACTGATATTC TCTATACTTT AACAATCTCT CTCATAAATC
    ACTTCATCAA AAATCTAATA TTTACGAATC AAAGGACTGG TGAGAAAACA
    GAAAATGTAA TAAACAATCA ACCGGAGAGA TCTAAATCTC TCTCACGACC
    ACCGGCCAAT TAACTTCTTA TTTAAGCTAG GTACAACAGT TTTTTTGACA
    AATTCAAGAA AAATCATATA TTAACGGAAC CAGATGGAAC TTTTTTTATT
    ACTGTCATAT TGGCGTCTTT TTTTGTATAT CCAGCGTGTT CCTACTAAAC
    ATTACCGGAA AAAACGTAAT TACAAGGAAT GCCATTGCCA CGTCAGAAAT
    TGCTGACGTG GATTAAATGA ACTCAGCCGT AACGCGATAC AGCGGCAGTT
    A
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 4525592 [Map]; Strand: c
      • AT2G11345.1 - [+] show detail - transposable element gene
        Distance: -2295; Region: intergenic
      • AT2G11350.1 - [+] show detail - transposable element gene
        Distance: -1388; Region: intergenic
    Flanking Genome Sequence: GT15568 - 5-prime edge
    TGTTGCACAC ATATATTCCT ATCGCAAATT TAATCAAGAT CTGATTTTTA 
    AAACTATATT TATTTGTTAT AGAGTGATCA CATTTAACCA TAAAGAAAAA
    GTTGACAAAG ATTAAAGTGA ATTCAAAGTG CCCTGAATAA CTGATATGAC
    TGTCATTAAC TAAGTTGTTT TATGAGAATT GTGATAATTT ATGGGGACGC
    TATCAAAGAA AAAATAGGGG GGGTCTTCAC AGTCCGGTTT GTTTT

AT2G11345.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G04130.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994)
Link
InterPro Scan - TAIR

AT2G11350.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
Mutator-like transposase family, has a 9.4e-56 P-value blast match to O22273 /233-373 Pfam PF03108 MuDR family transposase (MuDr-element domain)
Link
InterPro Scan - TAIR