1. Home
  2. Mutant Lines
  3. GT15572

GT15572

CSHL Arabidopsis genetrap mutant lines

Original: GT15572

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15572

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1419710 [Map]; Strand: c
      • AT2G04170.1 - [+] show detail - TRAF-like family protein
        Distance: -463; Region: promoter
      • AT2G04170.2 - [+] show detail - TRAF-like family protein
        Distance: -193; Region: promoter
      • AT2G04170.3 - [+] show detail - TRAF-like family protein
        Distance: -690; Region: promoter
      • AT2G04170.4 - [+] show detail - TRAF-like family protein
        Distance: -219; Region: promoter
      • AT2G04170.5 - [+] show detail - TRAF-like family protein
        Distance: -193; Region: promoter
    Flanking Genome Sequence: GT15572 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTATACACAT 
    ACATTATTAC TTTGTTATTA GGGATATTAT TGTTTGACTT TGAAGGTGCT 
    ATGCATACAT TGTTATTAGG AATATTACTT ACTACATAAC ATACATATTC 
    TTGTGAGATT TGTTTTGGTT ATTGCTATTT GATTTGTTTT GGATACATTG 
    TGCGTATCCA TGAACTTTTG CTTGCACATA TTTTTTTTGT ATTTGTATTA 
    CATTCATATT ATATAGATAT AATATTAGTT TCATATACAT ACTTTGTATA 
    TATAGTTTTG TGTACATATT ATATACATAC TAGTTTTGTG TGAAAATTTC 
    ATACTAGCTA AACTTAATTT TTTTCATACT ACACCTCTAA AATAGAGTCT 
    CCATCCAATA AGTTCTTTTC GAATAAGTGA GTGCGTTTCG AATAAGTTCT 
    TTTTATGAAC ATGGTTTGCA TTTTTTGGTT ATTTTTAAAA ATATGTATTC 
    GGTGGAACCG AAGTTTCTTT ATAAGCTTTC TATTTTCTTT TGTTGTGTTG 
    GCTCACGTTC ACAAGTCATT GTCATTTATG AGATTACTTC AATAAAACGA 
    ACCAAAGGTT TTGGCTTTAT TT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1419652 [Map]; Strand: c
      • AT2G04170.1 - [+] show detail - TRAF-like family protein
        Distance: -405; Region: promoter
      • AT2G04170.2 - [+] show detail - TRAF-like family protein
        Distance: -135; Region: promoter
      • AT2G04170.3 - [+] show detail - TRAF-like family protein
        Distance: -632; Region: promoter
      • AT2G04170.4 - [+] show detail - TRAF-like family protein
        Distance: -161; Region: promoter
      • AT2G04170.5 - [+] show detail - TRAF-like family protein
        Distance: -135; Region: promoter
    Flanking Genome Sequence: GT15572 - 5-prime edge 
    CCTACTTTCT CCCTGTATGT GTAGACTTGT GTGTAGTCAT ATATTAATAA 
    TTATAGTATT GTTTTTGGCA CGATGTATCC CTATTCAGTC TTTTTATATT 
    GTAATTATGA GCTCGGTCAA TAAGTAACAC GATACGTCTC GTTTGCCTCA 
    AGAAAAAGAT TCGTCTCTGT GTATAAATGA AGACTTGGCC AAGAAAGAAA 
    AAAATCAGAT CTCAAAAAAT GGTTTCATCC TTCTCTCGAC GATCNCTTTA 
    TCGATTCTTC TTTCGCTCAG AGCCCAATTC AACAGGTATT TTTGTTTGTT 
    TCTCATTTTT TTAAAGCATT TTTATACATA GGATTTTGTT TAGTTTTTGG 
    ACAAATCCAT TGGCTTTTTA CTAAACGTTT TAACATTAAT ATTAACAACG 
    TAGTTTTCTT TTGGTAATAA TAATAATAAG TATTCGATTT AGTTATAGTT 
    CACTAGTTCA AGCAAACTCA TAAAAATATA TCCTGAAATC TTCGTACGAG 
    GTAAGTAACT CAAGTCTTTC CTCATCAGGT TTAAACCAAT CCTATGAATA 
    GAGGAGGTTG TGGTGGTGGC CCTGGTAGAG GCGGTCGTGG TTTTGGTGGC 
    CGCGGAGGAG GTCCTGGTTT TGGTCCAGGA GGTCCTGGTT TTGGCCCAGG 
    AGGTCCTGGT TTTGGTCCAA GAGGTCCTGG TTTTGGCCCA

AT2G04170.1

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT5G26280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G04170.2

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT5G26280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G04170.3

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT5G26280.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G04170.4

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT5G26280.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G04170.5

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT5G26280.1); Has 40157 Blast hits to 13977 proteins in 907 species: Archae - 22; Bacteria - 17141; Metazoa - 12439; Fungi - 1936; Plants - 3869; Viruses - 495; Other Eukaryotes - 4255 (source: NCBI BLink).
Link
InterPro Scan - TAIR