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GT15577

CSHL Arabidopsis genetrap mutant lines

Original: GT15577

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15577

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4111811 [Map]; Strand: w
      • AT3G12915.2 - [+] show detail - Ribosomal protein S5/Elongation factor G/III/V family protein
        Distance: -818; Region: promoter
    Flanking Genome Sequence: GT15577 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACTCATT GACACTAGTT 
    TGTAATTGCG ACTGTAATAT GAAGGGTGGA ATCGAAGCCT GAAACAGATG 
    AGAGAAGAGG CAGGAGGTTT ATACCAGTAC ACAAAAGGGC GTCAAAGGTT 
    TAAGTAAACA AACTGTTCTA AAAGGAACTG CTCATGTGCC GAACTTCCAG 
    GTTTTAGAAA GTAAACTTGA AACAGATGCC AGGAAATTCA TACCATAAAG 
    AGTCTTCGTT TGTTCAATAA ACCGTTTCCG CTGCAATAAA ACCAGAAGAA 
    GCATTGTGAC CAATTAAAGC AAAGAGACAT GGATCTAAAT GAGACTCTAA 
    CAAAGCTGCA AAAGGAAAAA ACAAAGGTCA TCAGACACGG AATAGCCAAA 
    TGCAGCAGAA TAAGAACCCA ACTTACAAAG TACAAGACGG AAATTACTAC 
    ACAATCAATC ACACGTACAT AGTTGGCTAC TGGATAACCA GTGGAATCAG 
    TCAGTAAAAT GATATCAGAC TACTCGATTG CATGATTTGA AGTATAAAGC 
    TTAACCTATC TACAATTTTC ACGCCAATTC CAACTGTTTA TTGAACCATA 
    TCCTAGTCAT GTCTCGGGAA CACCCAAAAC CTCTGCAGTT TAATTCGATA 
    TATACTGACT CGATTGTAAA CTGAGCTAAT CGTCTCTTAA ATTGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4111883 [Map]; Strand: w
      • AT3G12915.2 - [+] show detail - Ribosomal protein S5/Elongation factor G/III/V family protein
        Distance: -746; Region: promoter
      • AT3G12915.1 - [+] show detail - Ribosomal protein S5/Elongation factor G/III/V family protein
        Distance: -951; Region: promoter
    Flanking Genome Sequence: GT15577 - 5-prime edge 
    CTTTCTCCCT GTAATGAGAG AACCCAATTC GATCAGAGGT ATGCTTTCTC 
    TTCTTGACAA CAAGTAAAGT AAACAGGGTT TCTGTTTCTC CACTTCCTTT 
    TATGGTTTTG GTTTTGAAAA GTGAAATCTT TATGTGAAAG TTCCATTTTT 
    TTGTTTTAAT AGGATTTGAG ATTAATGAGT AATTTAAAAT AAGTGAGCCT 
    ATTTAGGCCC TAAAGACAAA AAAAAATCCT AACTTTTTGT CTTTTTTTAT 
    TAAACTAAAA TATCAGGGTC ATGATTTACA ATCTTTATTT TTTCTTGATA 
    CTTTTCATGA TTTTAGTTTG AAAAAAAAAA TGTATAAAAT CATAAACCAA 
    TAACCCCATA ATTGAAATCA TTAAAAATCA TAGATTCTTT TGTTTTAGTT 
    AAAAAACATC AATTTTTAAG GACTTTATTA AATTATGAAT CTAATACCTC 
    AAAATTTATG AAGACTTTAG ATTATTTTGT ATAAATCAAA ATCTAATAAC 
    ACTAACTGTT AACAGAATCT TATAAAATCT TAATTTAATT ACACAAGATT 
    TTTTATAACA TTAAATCGCT AAAAATTTAT ATAAATCGAA AACCAATAAT 
    CCCCCTTAAT TTTTTTTAAA AAAA

AT3G12915.1

Model type
Protein coding
Short Description
Ribosomal protein S5/Elongation factor G/III/V family protein
Computational Description
Ribosomal protein S5/Elongation factor G/III/V family protein; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000), Translation elongation factor EFG/EF2, domain IV (InterPro:IPR005517); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5/Elongation factor G/III/V family protein (TAIR:AT1G56070.1); Has 62937 Blast hits to 55974 proteins in 4670 species: Archae - 1189; Bacteria - 40681; Metazoa - 3235; Fungi - 1899; Plants - 1092; Viruses - 1; Other Eukaryotes - 14840 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G12915.2

Model type
Protein coding
Short Description
Ribosomal protein S5/Elongation factor G/III/V family protein
Computational Description
Ribosomal protein S5/Elongation factor G/III/V family protein; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EFG/EF2, domain IV (InterPro:IPR005517), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5/Elongation factor G/III/V family protein (TAIR:AT1G56070.1).
Link
InterPro Scan - TAIR