Home
Mutant Lines
GT15578

GT15578

CSHL Arabidopsis genetrap mutant lines

Original: GT15578

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15578

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 5; Position: 9237821 [Map]; Strand: w
- AT5G26320.1 - [+] show detail - TRAF-like family protein
  Distance: -489; Region: promoter

TTCATCCCTA AATTAACATG AACGTACCAA TTGATAATAT TTGGATCATG 
AGTCGTTTAG TCAAATTAAT GAGTGAGGGC CACATACTAA ACTAATTAAC 
ATTGTATTCC AAGATAGGGA GTACCTATCC GATTATCTCT CATTGACCAT 
CTCTCATAAA CCATCATTTA TCTTCCTTAA CCATCATTCA TGACCACATG 
ATCCACGCT

3 prime edge [+] show sequence
1. Chromosome: 3; Position: 4111367 [Map]; Strand: w
  - AT3G12910.1 - [+] show detail - NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
    Distance: 719; Region: intergenic
  - AT3G12915.2 - [+] show detail - Ribosomal protein S5/Elongation factor G/III/V family protein
    Distance: -1262; Region: intergenic
Flanking Genome Sequence: GT15578 - 3-prime edge
```
TACTACACAA TCAATCACAC GTACATAGTT GGCTACTGGA TAACCAGTGG 
AATCAGTCAG TAAAATGATA TCAGACTACT CGATTGCATG ATTTGAAGTA 
TAAAGCTTAA CCTATCTACA ATTTTCACGC CAATTCCAAC TGTTTATTGA 
ACCATATCCT AGTCATGTCT CGGGAACACC CAAAACCTCT GCAGTTTAAT 
TCGATATATA CTGACTCGAT TGTAAACTGA GCTAATCGTC TC
```

5 prime edge [+] show sequence

Chromosome: 5; Position: 9237910 [Map]; Strand: w
- AT5G26320.1 - [+] show detail - TRAF-like family protein
  Distance: -400; Region: promoter

CCTACTTTAT CCCTGCATGT TATAGAGGCA AGGATGGTGT GGTGTGAGTC 
CTCCCATCAT CCTTAATCAA CTAGCTACTC AACGAACTGC TTAATAGCAT 
CCCTTGAGCT TCTTTCGAAG CTTCGCGTCG TTAGTTGATG CGGGACAAGA 
GGCACAATAT AGTCCTTCAG ATTGTCGACT TTACGTGTAT TGTAACCACA 
CCTGATACCA CCCTTTACAT AATGTAAGAG GTTTGACTTA AACATTTTAA 
CAATATTTTG AACATTATGC TGCTCACGTC TAATCTGATA CTTGACACAT 
TCCAAGTCGA CCAAAAGTAA TAATAATGAA TGTGTAGAAA TATACATATT 
TTTCCACCAT ATGGATCCAC TTTCAGTATT ATATAGTAGT AACGAAACTC 
ATTAAATAAG TAACTCTGTT TCTATATATA TGTAATGCAT TTCCCAAAAA 
ATTGAAAAAC CATATGAGAA AATGGATTAT CAGAAATGGA GTCTAGGT

5 prime edge [+] show sequence

Chromosome: 5; Position: 9237909 [Map]; Strand: w
- AT5G26320.1 - [+] show detail - TRAF-like family protein
  Distance: -401; Region: promoter

TCCTACTTTC TCCCTGCATG TTATAGAGGC AAGGATGGTG TGGTGTGAGT 
CCTCCCATCA TCCTTAATCA ACTAGCTACT CAACGAACTG CTTAATAGCA 
TCCCTTGAGC TTCTTTCGAA GCTTCGCGTC GTTAGTTGAT GCGGGACAAG 
AGGCACAATA TAGTCCTTCA GATTGTCGAC TTTACGTGTA TTGTAACCAC 
ACCTGATACC ACCCTTTACA TAATGTAAGA GGTTTGACTT AAACATTTTA 
ACAATATTTT GAACATTATG CTGCTCACGT CTAATCTGAT ACTTGACACA 
TTCCAAGTCG ACCAAAAGTA ATAATAATGA ATGTGTAGAA ATATACATAT 
TTTTCCACCA TATGGATCCA CTTTCAGTAT TATATAGTAG TAACGAAACT 
CATTAAATAA GTAACTCTGT TTCTATATAT ATGTAATGCA TTTCCCAAAA 
AATTGAAAAA CCATATGAGA AAATGGATTA TCAGAAATGG AGTCTA

AT3G12910.1

Model type: Protein coding
Short Description: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Computational Description: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 42 (TAIR:AT2G43000.1); Has 2920 Blast hits to 2915 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2920; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G12915.2

Model type: Protein coding
Short Description: Ribosomal protein S5/Elongation factor G/III/V family protein
Computational Description: Ribosomal protein S5/Elongation factor G/III/V family protein; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EFG/EF2, domain IV (InterPro:IPR005517), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5/Elongation factor G/III/V family protein (TAIR:AT1G56070.1).
Link: InterPro Scan - TAIR

AT5G26320.1

Model type: Protein coding
Short Description: TRAF-like family protein
Computational Description: TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT5G26280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR