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GT15586

CSHL Arabidopsis genetrap mutant lines

Original: GT15586

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15586

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8215985 [Map]; Strand: c
      • AT2G18950.1 - [+] show detail - homogentisate phytyltransferase 1
        Distance: 5522; Region: intergenic
      • AT2G18960.1 - [+] show detail - H(+)-ATPase 1
        Distance: -5646; Region: intergenic
    Flanking Genome Sequence: GT15586 - 3-prime edge
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCTTCACATA TTGATTACAC 
    GATTACACAC CAATAATTTT ACTTAACTAT TTTGCATTTT ATAATTGATT
    AGTAGAAAAA AAGATTGGGT CAAGTGGGTT CACACATCAC GAGATTCAGT
    GGATGTTAAA TCACAGAAGC TAGTACCACG GATCCATCCA CCTAGCTTTT
    TTCT
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8215868 [Map]; Strand: c
      • AT2G18950.1 - [+] show detail - homogentisate phytyltransferase 1
        Distance: 5405; Region: intergenic
      • AT2G18960.1 - [+] show detail - H(+)-ATPase 1
        Distance: -5763; Region: intergenic
    Flanking Genome Sequence: GT15586 - 5-prime edge
    CGTCTCAATT ATGAAAACTA ATATATGTTG TGTACACAAA AAGAAACCTA 
    ATATATTTTT TTTTTGGGAA AAAATGGGGA AACAAACTTC CGTGGACTTT
    AGGTTATTTT ATTTAGGGAC AAACCGGAAC AAAAAACAAG AAATTCACTT
    TTACCGTTTA TGTATGTACC TTCATTTAAA CCTTTTGGAA TCATTTCTGG
    CCATATCTTT TTGGGGCAAA TCTTCTTCAT GGATTAATGA CAAATTAAGA
    TTTTAAAAAA AAAACCAAAA AATTATGTGC TGTGTGTAAA GGTTGGCCAA
    GGAAAAAAAA ATGGGGCAAA ATAAAACTAA GCCTAAATTG AAAAGGGGCC
    TTTAAGATAA AAAGACTTAA AATATTGGAG AAATCTAAGC CAATTTGCCC
    CATCTTTTGG CTTAATGAAA AAAACCATGG GACATATGAA AAGGGAACCC
    TTTACTTGGT AATTTGTCCT ACACATGTAT ATGTATGTAG AAGTTAATAG
    TTATCCCCAC CCCCGCATAT ATATGTAAAA AATATTTAAT TGGGGAACAA
    TAAGAGTCCA ATAATAAAAG GACATGGGCA ACTATATGGG GGTAGGAAAG
    GAACTTATAT ATGTACATCA GCCCGTCAAT AACGCAAAGT ATTTTATTAG
    GGATTATTTT GATTACAAGT TATATGTTGG AAACTAGAAG CAGGGTATTA
    AAAAGCCCAA GTTCTTTGGA TTGAAACTTA AAAAGC
  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8215858 [Map]; Strand: c
      • AT2G18950.1 - [+] show detail - homogentisate phytyltransferase 1
        Distance: 5395; Region: intergenic
      • AT2G18960.1 - [+] show detail - H(+)-ATPase 1
        Distance: -5773; Region: intergenic
    Flanking Genome Sequence: GT15586 - 5-prime edge
    ATGAAAACTA ATATATGTTG TGTACACAAA AAGAAACCTA ATATATTTTT 
    TTTTTGGAAA AAAAGGG

AT2G18950.1

Model type
Protein coding
Short Description
homogentisate phytyltransferase 1
Curator Summary
Encodes homogentisate phytyltransferase involved in tocopherol biosynthesis. Has impact on seed longevity and plays a role in the adaptation to low temperature stress, notably phloem loading.
Computational Description
homogentisate phytyltransferase 1 (HPT1); CONTAINS InterPro DOMAIN/s: UbiA prenyltransferase (InterPro:IPR000537); BEST Arabidopsis thaliana protein match is: homogentisate prenyltransferase (TAIR:AT3G11945.1); Has 1047 Blast hits to 1044 proteins in 315 species: Archae - 194; Bacteria - 477; Metazoa - 7; Fungi - 6; Plants - 190; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G18960.1

Model type
Protein coding
Short Description
H(+)-ATPase 1
Curator Summary
Encodes a plasma membrane proton ATPase. Mutants have a reduced ability to close their stomata in response to drought and are affected in stomatal but not seed responsiveness to ABA.
Computational Description
H(+)-ATPase 1 (HA1); FUNCTIONS IN: protein binding, ATPase activity, hydrogen-exporting ATPase activity, phosphorylative mechanism; INVOLVED IN: response to water deprivation, proton transport, response to abscisic acid stimulus, regulation of stomatal movement; LOCATED IN: nucleus, plasma membrane, vacuole, membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, plasma-membrane proton-efflux (InterPro:IPR006534), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: H(+)-ATPase 2 (TAIR:AT4G30190.1); Has 37421 Blast hits to 33000 proteins in 3185 species: Archae - 713; Bacteria - 23967; Metazoa - 3870; Fungi - 2594; Plants - 1874; Viruses - 3; Other Eukaryotes - 4400 (source: NCBI BLink).
Link
InterPro Scan - TAIR