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GT15639

CSHL Arabidopsis genetrap mutant lines

Original: GT15639

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15639

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1976322 [Map]; Strand: c
      • AT4G04120.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
      • AT4G04130.1 - [+] show detail - transposable element gene
        Distance: -861; Region: promoter
    Flanking Genome Sequence: GT15639 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TAGCAGCAGG 
    GCTCCTTGGT TCTTCTCCCC CAACAACTAT GGTTGGTTCG ACTAATCAAT 
    TGACGCAAAT TCCTGCAAAC CTTGCTGCAG CTTTTGGGAC TACAACTATG 
    CCAGATCCTA CAGATGCAAG TTGGTACATG GACACGGGCG CGACAACTCA 
    CCTCACCGCG CAGCCAGGTA CCCTCCATTC CCTTTTTAAT TCGAGCTCAT 
    CCCCATCGGT TGTGTTCGGA AATGGATCTT CTGTTCCAAC TAAAGCCATC 
    GGTTATTCAT TTTTGCCTTC TAAAATACGA CCTCTCCATC TTCATAATGT 
    GCTTGTTTGT CCTTATATAA TCAAAAATCT CGTTTCTGCA CGTCAATTTA 
    CTAAAGATAA TTATGTATCT GTGGAATTTG ATCCATTTGG TTTTTCTATT 
    AAGGATTTCA ATACTCGGAC GAATCTTCTC CGATGTAACA GTGATGGTCC 
    TCTCTACTCC ATCACGTCGC CACCATTATC ATCATCATCA TCGTCATCAC 
    CTCCACAAGT CATGGTAGCA ACGGTTCCCG ATTCTTCATT GTGGCACCGT 
    CGTC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1976263 [Map]; Strand: c
      • AT4G04120.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
      • AT4G04130.1 - [+] show detail - transposable element gene
        Distance: -920; Region: promoter
    Flanking Genome Sequence: GT15639 - 5-prime edge 
    CCTACTTTCT CCCTGCCTGC TGCTGGGTTC GTGGCTGTCA AGTATGCCAT 
    CGGTGGTCTT TGCATCCAGT TTTGTTGTGG CCAGTGTGGA TATGGGGTTG 
    GTGTTGAGAG CCATGGTTGT TGTGTCTGCC AATTGCGAGG ATTCCATTGC 
    CAGTTTTGGC GTCCACGACC TCTGCCGTTA CTGCCGTTAC TGCCGGTACC 
    GCAACTTCCA CGTCCACGAC CTCTACCATT GTTGTTGTGC CCATTGTAGT 
    TGTTGTGGTT GTTGTCGCGG TAGCCGGTGT TGTTGTTGTC ACGATAAGTG 
    TTGTGATTCA

AT4G04120.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 3.8e-19 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element)
Link
InterPro Scan - TAIR

AT4G04130.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G42690.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G20750.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD65034.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653)
Link
InterPro Scan - TAIR