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GT15691

CSHL Arabidopsis genetrap mutant lines

Original: GT15691

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15691

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8075767 [Map]; Strand: w
      • AT1G22810.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: -730; Region: promoter
      • AT1G22830.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -806; Region: promoter
      • AT1G22830.2 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -961; Region: promoter
    Flanking Genome Sequence: GT15691 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAGT 
    CAAATGCCAA AAATAAAGGA CCCCCTTTAG ACGGTGCTCA TGTCACGCAT 
    GACGCTAGTT TGTAACCAAA AGAGGCAAAG AAAGTCTTTC TTTATCCCAC 
    GTGGTTTAAC CATCGACGAC GATATTTCAC ATTCTTCATC GGTGGAGTTT 
    GAATCGACTT TTGTGTTTTT CACTGCTTTT CTCTATACTA TTATGTCATC 
    ACCTATTATA CAGATTTTTA TGAAACGAAA TAGAGGATAT ATGTAGTAGT 
    ATAATATTAT AGATTTCTAC TTAAGACTTT TTCATATAGA AAATGAAAAA 
    CTTATAAATT CACCTAACTA TAATATACCA AAGCAACAAC AACAAAAATT 
    AAACATTGAT TTTCTAATTG AAAAAAAAAA CAAAATATCT TTTATTTTGA 
    AACCA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8075822 [Map]; Strand: w
      • AT1G22810.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: -785; Region: promoter
      • AT1G22830.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -751; Region: promoter
      • AT1G22830.2 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -906; Region: promoter
    Flanking Genome Sequence: GT15691 - 5-prime edge 
    TACTTTCTCC CTGCATTTGA CCAAAGATCT GTAATGACTT AATGATTCTC 
    CACGGACAAC ACACAGACAC AACAGCCCAA ACTAACTGGA AAAAGTTATT 
    TTTTGTCTTC TTCTGTGTCT GCTGACTCAT GTACATGGTT GTCAAATTTT 
    AGTTCACACA CAACCACATC CAAAACACGA ATCATCCACG GAGAAACCCA 
    GTCTCATCAT GTATTTAATG TGGTTTCATC CTTCGGATGC ATAACCAATT 
    CTTTGTAGTT GATACTTGAT TAGGTTTTTC TCGACACTGA CATTTGGGAG 
    TTGATTGTGA TGTGATACAC CGTCTTATCA TAGTCACCGA CTCATTTAGA 
    AGAAACCTCA AAGGTAACTT GGTAAGTTAC GATTAGAGAT GTTTTTAGAA 
    ACGTCTAGCA GATTATTGAT ATCTGACAAT AAATATTCAC ACCTACTCGG 
    ATGGTCTATG CGATTTTAGA CAATTTAAAT GTTTATAAAA ACCCTAGTGT 
    ATCAGTATAT ATAAAATCAA TATTAATGAA ATAATGCAAT TAATAAATTA 
    CTTATTATAA GTTCTTATAA AAAAATACTA GTGACCTCAT TTTGTAATA

AT1G22810.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.
Computational Description
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G71520.1); Has 4908 Blast hits to 4906 proteins in 216 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4903; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G22830.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G71490.1); Has 41595 Blast hits to 13372 proteins in 196 species: Archae - 1; Bacteria - 4; Metazoa - 55; Fungi - 60; Plants - 41015; Viruses - 0; Other Eukaryotes - 460 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G22830.2

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G71490.1); Has 41595 Blast hits to 13372 proteins in 196 species: Archae - 1; Bacteria - 4; Metazoa - 55; Fungi - 60; Plants - 41015; Viruses - 0; Other Eukaryotes - 460 (source: NCBI BLink).
Link
InterPro Scan - TAIR