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GT15722

CSHL Arabidopsis genetrap mutant lines

Original: GT15722

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15722

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16473918 [Map]; Strand: c
      • AT2G39450.1 - [+] show detail - Cation efflux family protein
        Distance: -100; Region: promoter
      • AT2G39460.2 - [+] show detail - ribosomal protein L23AA
        Distance: -231; Region: promoter
    Flanking Genome Sequence: GT15722 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTACTTGG 
    ACCAGCCTTT AGAAGAGACG TCTCTGCTAA TTATCCACGT GGCGTTCTCT 
    CAATGGATTT GGGATCTCGC ACGTGATTGG AGGAGTCATC ATACACACGT 
    GTACAGTTGA GATTCAACTG CAATTAAACG ACCCCGTGAC ATGGTTATGA 
    GTCACATATG TGCCCTCTCA AACTCTTATT ATGTAGTATA AAAACTGTAT 
    TAGATACAAC CGACCCAAGA TATAGAAGAA CCTTTGAAAA ATGGTAGAAG 
    CCAGTTCAGC TAAAGCTTTC TTCTTCACAA ATCTCGTAAA ATATTAGACA 
    TGTAGAGCAG GCTTGTTGTT CTCTTATTGT CAAGCATAAG TAAATGATTA 
    TTGTTTAGTT TCGTGACCAA TTGTTTTTTT TTGGGTAAGC CATTGTTCGA 
    TTTGCTTTGG TTGGGCCAAA AATTGTATGC TTTCAAGTCA AACCAAAGTT 
    GACTAAATTT TATTCGGAAA AAATTTACTT GGGAAGGGCA AAACCAAAGA 
    AGGGTCTTAG ACCCAGGAGA AGAAGCAAAT TTGTTTCTTA CGCCAAAAGA 
    CACGTTTGTA TGTTTCTTAC GCCAATACCT TTACGTTAAA AATAAACTAG 
    TACCTTAAAT T

AT2G39450.1

Model type
Protein coding
Short Description
Cation efflux family protein
Curator Summary
Encodes a Golgi-localized manganese transporter that is involved in Mn tolerance. When expressed into yeast cells, this gene confer Mn2+ and Cu2+ tolerance.
Computational Description
MTP11; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT1G79520.1); Has 5154 Blast hits to 5150 proteins in 1777 species: Archae - 162; Bacteria - 4222; Metazoa - 44; Fungi - 292; Plants - 207; Viruses - 0; Other Eukaryotes - 227 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G39460.2

Model type
Protein coding
Short Description
ribosomal protein L23AA
Curator Summary
Encodes a 60S ribosomal protein L23aA (AtrpL23aA). Paralog of RLPL23aB.
Computational Description
ribosomal protein L23AA (RPL23AA); FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleotide binding; INVOLVED IN: response to oxidative stress, response to high light intensity, response to cold, translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, intracellular, large ribosomal subunit; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L23/L25, conserved site (InterPro:IPR001014), Ribosomal protein L23/L15e, core (InterPro:IPR012678), Ribosomal protein L23/L25, N-terminal (InterPro:IPR005633), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ribosomal protein L25/L23 (InterPro:IPR013025), Ribosomal protein L23 (InterPro:IPR019985); BEST Arabidopsis thaliana protein match is: ribosomal protein L23AB (TAIR:AT3G55280.2); Has 2634 Blast hits to 2634 proteins in 929 species: Archae - 307; Bacteria - 1168; Metazoa - 411; Fungi - 142; Plants - 120; Viruses - 0; Other Eukaryotes - 486 (source: NCBI BLink).
Link
InterPro Scan - TAIR