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GT15808

CSHL Arabidopsis genetrap mutant lines

Original: GT15808

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15808

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14470677 [Map]; Strand: w
      • AT2G34270.1 - [+] show detail - unknown protein; Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bac...
        Distance: -801; Region: promoter
      • AT2G34280.1 - [+] show detail - F-box and associated interaction domains-containing protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15808 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCATGAAGT 
    AATAGAGAGT TGATCATGTG CAACCTTGAT GATCGTTTGT GCGTATCAGA 
    AAAAATGTGG CCCAACCAAG TGATATGGTC GTTGGATTCA GATCACACGA 
    CATGGAAGGA AATATATTCC ATAGATCTCA ATATAACTTC TTCTTTGTTT 
    GGGAGTAATG GATTCGCACT CAGACCACTA GGAGTTTTTG ACAAAGACAA 
    GTTGTTGTTT TGTGAACCTG AATACGGGGA TCAATTGCTA ACACATGATC 
    CCAAAACAAA ATCTTATGAA TTTGATTACA GATTTTTTTC CCCTACTACT 
    GCACTCCCTC TTTGTTATTT CCAGAGTTTA ATCTCTATTT TCTAATGCTT 
    TTTAGTTTTC CAAAACATTG TAATTTCAAA GTTTTAATAA TCTCAATTGG 
    TTCACCTCCT ACTAATTATG CATGCTAGAG ATGTTTAATT GTTTACGTAA 
    ATTTCTCTTT CTCTTATATA TGGNGTTGTT TCTCCTACTA TTGAATTGAT 
    CCATTTTTCT ATTTTATTTT TTCTGATACA TTTGGATTTG TATATGCAGA 
    TTCCACAATT TATTCTATTG TGTTCGCTTT GCTCTCATCT TAGCAAAAAC 
    ATATATCATC TTGCGTGCGT GGAGTAGAGC TGACGGTTCA AATTGATTGT 
    TTCTTAATTC TTTTGTTA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14831123 [Map]; Strand: c
      • AT2G35180.1 - [+] show detail - pseudogene, 60S ribosomal protein L37a, blastp match of 96% identity and 1.7...
        Distance: -984; Region: promoter
      • AT2G35190.1 - [+] show detail - novel plant snare 11
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15808 - 5-prime edge 
    CTTTCTCCCT GAGAGAGAGA TTCATTCTCA CGATAAAGCA CGGAAGATGT 
    CATTGATTTG TCCTTCGATC TCAGCCAGCT CTTCGCTAAC CGCTGATATT 
    GGATCCATCT TTACACAGAT TCCCAGAAAA ATTCAGTGCC GATATACAAA 
    AGACAACAAT GTCTCTTCTT CAGATCCACG CGAGCAGTTT TTGAAAAATG 
    TCGACCACGA ATCGACTCGC CGAGATTAGA TCCGATGGAT CTGAAATCGA 
    ATCACCTCCA ACGAAAAGAA TTGAAAGCCT GGTGTCAAAA TCGCCGAGCA 
    AATCGTAATA ACAGAACCCG TGTTTTTTTT CTTCAGATCT AAGAACAATG 
    TGGATGTTCA AAATCGATAA CGAAGAGATA GATATCAAAA TCACGAGCAC 
    GAGCTCTCTC TCCCCTACAC CCAGATTTTA TTTGTTTTGT TTTTCCCTAA 
    TTTCTCTCGG ACATTTTTTG TTTTTGTTCT TGGGGAATTC TAAAAGCTAA 
    TTTTTTGCCA TTGATTTGGC TCGAAGGGAC GAAAATGAGA GATTTTGAAA 
    AACTGCGTTA CCGAAAACCA GTGGGACCCG CCACGACATC GTTTGTCAGT 
    GTTGGAACTC ATATAACCTG GGACGTACGA TTGGTCACCT CTCCAGATCT 
    GACGATCCAC ACTCTTTACA TTAGCTTAAT TTTGATAATT GACTTTAAAT 
    GAAATTAAAA TAAAGAGCAC ATCATAATAA TTAATTCGAA AACGAAACAA 
    AACTTTCAGT CCTTCATTAA ATTAGAATCG TTTATTTATT ATACAAACCG 
    GTAAATGCAA AAATCGAAAT CCAA

AT2G34270.1

Model type
Protein coding
Computational Description
unknown protein; Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G34280.1

Model type
Protein coding
Short Description
F-box and associated interaction domains-containing protein
Computational Description
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box associated ubiquitination effector family protein (TAIR:AT4G01640.1); Has 932 Blast hits to 918 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 930; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G35180.1

Model type
Pseudogene
Computational Description
pseudogene, 60S ribosomal protein L37a, blastp match of 96% identity and 1.7e-35 P-value to GP|20161109|dbj|BAB90039.1||AP003335 putative 60S ribosomal protein L37a {Oryza sativa (japonica cultivar-group)}
Link
InterPro Scan - TAIR

AT2G35190.1

Model type
Protein coding
Short Description
novel plant snare 11
Curator Summary
plant-specific SNARE located in cell plate of dividing cells. cofractionates with the cytokinesis-specific syntaxin, KNOLLE, which is required for the formation of the cell plate.
Computational Description
novel plant snare 11 (NPSN11); FUNCTIONS IN: protein transporter activity, SNAP receptor activity; INVOLVED IN: cytokinesis; LOCATED IN: plasma membrane, cell plate; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Sec20 (InterPro:IPR005606); BEST Arabidopsis thaliana protein match is: novel plant snare 13 (TAIR:AT3G17440.1); Has 871 Blast hits to 814 proteins in 236 species: Archae - 12; Bacteria - 157; Metazoa - 137; Fungi - 78; Plants - 153; Viruses - 0; Other Eukaryotes - 334 (source: NCBI BLink).
Link
InterPro Scan - TAIR