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GT15818

CSHL Arabidopsis genetrap mutant lines

Original: GT15818

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15818

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3110490 [Map]; Strand: c
      • AT3G10090.1 - [+] show detail - Nucleic acid-binding, OB-fold-like protein
        Distance: -464; Region: promoter
    Flanking Genome Sequence: GT15818 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGTATTT TGGTAGCAAG 
    TATAAAAGAG ATAGGAAATC TCGGTTGAAA TATTCAAGAA ATTGTGTTTT 
    TAGTTATTAT AGAGAGATTT ATCAAAATGT TTTTGAGTTG TTAATATTAT 
    TGACAATAAA TTTGTTTATT TCTAAAACCG AATCGTAAGA TTTTTCGAGT 
    ATTAAATATT CGTAGAGAGA TTAAATCTCT ACATATTTTC AAATCTCTCT 
    T

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3110428 [Map]; Strand: c
      • AT3G10090.1 - [+] show detail - Nucleic acid-binding, OB-fold-like protein
        Distance: -402; Region: promoter
    Flanking Genome Sequence: GT15818 - 5-prime edge 
    TTCCATCCTA CTTTCTCCCT GCAAAAACCA TTTTGATAAT CTTACTCTAA 
    CAAATTATCT TAAGCGACAA ATTAATGACT CTTTTCCATC CAAATCAATT 
    ATTTTCTTTT TATATTCAAG ATTTCGAGAT TTATAAAAAA TTGAACTATG 
    TTATTGCTGA TGTGTGAACT TTAAATGTTC AAATAAAATG ATGTTCAGCC 
    AAACTTTCAG CAAATAGCAT CTAGCTCCTC CAGAGACATC TTTTTTTTTT 
    TAGCAACTTT GATCGTTCCA AAATCTAAGG GTCTTAATTG TTACAAATCT 
    ATAACGGTTA CCCGGGGAAA AGAAAGGGAA AGGGCTCCCC CTTCTTTCAA 
    AACACTAAAA AACCGGTTCG GCCGGAAATT AACGGAACTG ATCCCTTATT 
    AAAACCGGGC CAGGTTTTTT TGGACTTTGG GCCAACATTA TTTTATTTTT 
    ATAAGCCCTC TCCCACAAAA CCAGTAAATT ATGGGGGCGC CCCTCAAATT 
    AGGGTTCTAG GATCTCGGCT CTAAAAACTC TTATCCCCCC TAAAACTCTT 
    TACCCATCGA AA

AT3G10090.1

Model type
Protein coding
Short Description
Nucleic acid-binding, OB-fold-like protein
Computational Description
Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S28e (InterPro:IPR000289); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT5G03850.1); Has 1066 Blast hits to 1066 proteins in 391 species: Archae - 235; Bacteria - 0; Metazoa - 333; Fungi - 148; Plants - 161; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).
Link
InterPro Scan - TAIR