1. Home
  2. Mutant Lines
  3. GT15823

GT15823

CSHL Arabidopsis genetrap mutant lines

Original: GT15823

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15823

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3110479 [Map]; Strand: c
      • AT3G10090.1 - [+] show detail - Nucleic acid-binding, OB-fold-like protein
        Distance: -453; Region: promoter
    Flanking Genome Sequence: GT15823 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAGTATT 
    TTGGTAGCAA GTATAAAAGA GATAGGAAAT CTCGGTTGAA ATATTCAAGA 
    AATTGTGTTT TTAGTTATTA TAGAGAGATT TATCAAAATG TTTTTGAGTT 
    GTTAATATTA TTGACAATAA ATTTGTTTAT TTCTAAAACC GAATCGTAAG 
    ATTTTTCGAG TATTAAATAT TCGTAGAGAG ATTAAATCTC TACATATTTT 
    CAAATCTCTC TTTTTCTCTT CATCTTCACT CGA

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT15823 - 5-prime edge 
    TCCGATTACC ACGCAAAGAG A

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6650876 [Map]; Strand: c
      • AT1G19240.1 - [+] show detail - unknown protein; Has 24 Blast hits to 24 proteins in 11 species: Archae - 0; ...
        Distance: -456; Region: promoter
      • AT1G19250.1 - [+] show detail - flavin-dependent monooxygenase 1
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: GT15823 - 5-prime edge 
    TCTACTTTCT CCCTGGTGGC TAAGCTGGCT AGTGGATGAG AAATTCCCAT 
    TACCACGTTA TGATAACATG TTGGATCAAT TCTTAAAAGA AATGGAAGTG 
    ACGATAAACT CAAGCAGATT CTACAAACGT CATTGCATTT CCACGTTCAG 
    CATCCAACAT GCTGATGATA TGTGCAACGA CATGGGACTC AATCCTTGGC 
    GTAAATCCGA CTTCCTCCTT GAAGCTTTTA GTCCTTATGG TTCTCAAGAT 
    TACCGACTCG GTCAAGAAGA AAAAGAAGAT ATGACTGCTT AAACTAAATT 
    GAATATATAT ATTACAAAAT GAAATTGTTA CGAATTGTTA TGTGATGGAT 
    GTATAATTAA CGAATAAATA AATGTATGTG TAAAGTACAT G

AT1G19240.1

Model type
Protein coding
Computational Description
unknown protein; Has 24 Blast hits to 24 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G19250.1

Model type
Protein coding
Short Description
flavin-dependent monooxygenase 1
Curator Summary
FMO1 is required for full expression of TIR-NB-LRR
Computational Description
flavin-dependent monooxygenase 1 (FMO1); FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: in 7 processes; LOCATED IN: endomembrane system, intrinsic to endoplasmic reticulum membrane; EXPRESSED IN: stem, leaf whorl, sepal, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Dimethylaniline monooxygenase, N-oxide-forming (InterPro:IPR012143), Flavin-containing amine oxidase (InterPro:IPR001613), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT5G45180.1); Has 7639 Blast hits to 7432 proteins in 837 species: Archae - 6; Bacteria - 3396; Metazoa - 753; Fungi - 1311; Plants - 833; Viruses - 0; Other Eukaryotes - 1340 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10090.1

Model type
Protein coding
Short Description
Nucleic acid-binding, OB-fold-like protein
Computational Description
Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S28e (InterPro:IPR000289); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT5G03850.1); Has 1066 Blast hits to 1066 proteins in 391 species: Archae - 235; Bacteria - 0; Metazoa - 333; Fungi - 148; Plants - 161; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).
Link
InterPro Scan - TAIR