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GT15837

CSHL Arabidopsis genetrap mutant lines

Original: GT15837

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15837

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28317094 [Map]; Strand: w
      • AT1G75450.1 - [+] show detail - cytokinin oxidase 5
        Distance: 0; Region: exon3 (CDS)
      • AT1G75450.2 - [+] show detail - cytokinin oxidase 5
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT15837 - 3-prime edge 
    TGAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA 
    CGGGTATTGT ATTCGAGCTT CAAAGTGTTT ACGGAGGACC AAGAGTACTT 
    AATCTCAATG CATGGTCAAT TAAAGTTTGA TTACGTGGAA GGTTTTGTGA 
    TTGTGGACGA AGGACTCGTC AACAATTGGA GATCTTCTTT CATCTCACTC 
    GACC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28317286 [Map]; Strand: w
      • AT1G75450.1 - [+] show detail - cytokinin oxidase 5
        Distance: 0; Region: exon2 (CDS)
      • AT1G75450.2 - [+] show detail - cytokinin oxidase 5
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT15837 - 5-prime edge 
    TTTTGATAGC TAGTCATTAA AAAAATATTA CCCTTTGGGG AGCAGGTTCG 
    AGAGAGATTC GTGCTCGAGT GATGATCCCA AATTGACCTA ATCCACCAAG 
    AACTCCATGG AATAGCCTTG TGTTCTCTTC TTCTGAGCAT CTCATCACCT 
    CTCCTTTCCC TACTTTTTGG TATCAATTTC TTGTTATTAG TAAAACTTCA 
    AACAAAAGCA TTTAAAATAT ATGAACTTGA ATGTTTTAAT ACTAACCAGT 
    TACAACGTCG AGCTCAAGGA CGTTACTAAT TTGAGGACCA TGGTGAAAAG 
    CTTGACCACT GATTCCTGCA TTGGAGAGTG TACCTCCAAC GGTTAGATAC 
    AAGTAATCCG TCCATGATTT TGGTGCTAAG CCATGCTCCA ACGTTTTCT

AT1G75450.1

Model type
Protein coding
Short Description
cytokinin oxidase 5
Curator Summary
This gene used to be called AtCKX6. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.
Computational Description
cytokinin oxidase 5 (CKX5); CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD/cytokinin binding domain (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), Oxygen oxidoreductase covalent FAD-binding site (InterPro:IPR006093), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: cytokinin oxidase/dehydrogenase 1 (TAIR:AT2G41510.1); Has 6615 Blast hits to 6610 proteins in 1194 species: Archae - 154; Bacteria - 4290; Metazoa - 145; Fungi - 1218; Plants - 369; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G75450.2

Model type
Protein coding
Short Description
cytokinin oxidase 5
Curator Summary
This gene used to be called AtCKX6. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.
Computational Description
cytokinin oxidase 5 (CKX5); CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD/cytokinin binding domain (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), Oxygen oxidoreductase covalent FAD-binding site (InterPro:IPR006093), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: cytokinin oxidase/dehydrogenase 1 (TAIR:AT2G41510.1).
Link
InterPro Scan - TAIR