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GT15847

CSHL Arabidopsis genetrap mutant lines

Original: GT15847

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15847

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25842502 [Map]; Strand: w
      • AT5G64660.1 - [+] show detail - CYS, MET, PRO, and GLY protein 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15847 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACTGTTA TCAGATTCAA 
    CGTCGTCGTT GAGCGTTTCG GTGACGGAGA AATGCTTGAA GCTTCTGGAG 
    ATTTTAGCAT CTACAAAGGA AGGGAGATCG GAAATTTGCG GCGGAGATGG 
    CGAGTGTTTG AAGACGGTGG TCAAGAAGCT GATGAAAGTG TCAACGGCGG 
    CGACGGAGCA CGCCGTGACG GTGCTGTGGA GTGTTTCTTA TCTATTCAAA 
    GAAGATAAAG CTTTGGAAGC TGTTACAAGT GTTAACGGAG TTACGAAAAT 
    TCTGTTACTG TTACAGAGCA ATTGCTCTCC CGCCGTTAGA CGTATGTTAA 
    CGGATCTTCT TAAGGTCTTC AAGGTGAATT CAAGATCTTG CCTTTCGGCT 
    TACGACACCA AAACGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25842569 [Map]; Strand: w
      • AT5G64660.1 - [+] show detail - CYS, MET, PRO, and GLY protein 2
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15847 - 5-prime edge 
    CCTACTTTCT CCCTGGATAA CAGTTTCGTA ACATCTCCGA TGAGTTTCTC 
    TCGGAGGAGA TTGAGTTTCA CACGTTTCGG TGAGCTAATC GCGATCAAGC 
    ACGATAAACT CGATTCGATT AAACTTAAAT CAGAATCTTT ACTAATCGAT 
    TTCATTAGCT CCGTGATTAA TTCTTCTTCT CTCGACGATT AACAGCTTTG 
    ATTCAGCGTC GACGGCGATG AACTCAAGTA AACCGGCGCA ATCAATTTTC 
    AATTCGACAT TCCCGGTTTT AAACAAGTAG ACGATCACCG ATAACCGATC 
    TCGACCGTTG GTTAAAATCA GATTCGAAAA CCGTCTCCGA TCTGAGACTT 
    TGCTTCGAAT CGTACTCAGA ATCTTCACCG CTTCTTGAAC AACCAGAGAT 
    TTCGCGGCGG AGGTGGTTTC GAAATCCACC TGGTTAATCA GATCCACGAG 
    AAGTATCACG AAATCATCTT TTCCGGCGAG AAATCCTCTG TTATCATCAG 
    ATTCTCTCCC GAATCGAACA ATCTTCGACA AAACCTCGCG ATCATCTC

AT5G64660.1

Model type
Protein coding
Short Description
CYS, MET, PRO, and GLY protein 2
Computational Description
"CYS, MET, PRO, and GLY protein 2" (CMPG2); FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G09800.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR