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GT15912

CSHL Arabidopsis genetrap mutant lines

Original: GT15912

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15912

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15684019 [Map]; Strand: w
      • AT4G32500.1 - [+] show detail - K+ transporter 5
        Distance: 0; Region: intron9 (CDS)
    Flanking Genome Sequence: GT15912 - 3-prime edge
    AACGGTAGAG GTTTTTACCG ACCGTTACCG ACCGTTTTCA TCCCAGGGAT 
    GAAAGTAGGA TGGGAAAATC CCGTACCCGA CCGGATCGTA TCGGTCAATC
    TCACTCGACT ATCCCGATCG ATTTCCAACC CCAGGTAAAA AACGAAAACG
    GCAACGGAAA CGGGATATAC AAAACGGTAA ACGGAAACGG AAACGGTAGA
    GCTAGTTACC CGACCGGATC GTATCGGTTC CTTTCACTCG ACGATCTGTT
    GAGTCTTTCA GATGCTGCAT TAGACCAAAA CATATCCCAG ATGAGAAAAA
    ATAGTCAAAC CAGCTAAAAT GTTGTAGTCA CTATGGATTT ATACGGAAAT
    AGCTTCGGAC TAACCTGAAG AAGATTATTC ATGATTATTG CCCCATCACC
    AACGTTTGCC TGAACAAGAT TTAAGAATGC TGTACGGTTC AGACGAAGCA
    ATTGACTCAA TCGTTTGGTT CGAACTGTGA ACAACTGTGG CCTGTAACAT
    AGAACCCCAA CTTCACCAAA AACATGGCCG GTCTGTGCTT CACCAACTAC
    CTGCAATGAA TACACAACTC ACAACTTAAA AACCGTCACA AAAGAGAAAT
    AAAAATGCGG ATTTTACCTG ATCCACTCCA TTCACACGCG CAATGATGTC
    CTGTCATATA GTAGAAATGT CAACTAATTT GAAAAAAGAA CTAGGAGAAA
    TAGAATTGTT TAGCTGATGT AACCAAAGCA ACTTACAACA GCTCCTGTGA
    CCATTATGTA AAAGTCTGAC GGTGCTTCAT TCCGCAAAAT CACATCTTCT
    TTAGGAG

AT4G32500.1

Model type
Protein coding
Short Description
K+ transporter 5
Curator Summary
Encodes AKT5, a member of the Shaker family potassium ion (K+) channel. This family includes five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500).
Computational Description
K+ transporter 5 (KT5); FUNCTIONS IN: inward rectifier potassium channel activity, cyclic nucleotide binding; INVOLVED IN: potassium ion transport, N-terminal protein myristoylation, ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Protein of unknown function DUF3354 (InterPro:IPR021789), Ankyrin repeat-containing domain (InterPro:IPR020683), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Shaker pollen inward K+ channel (TAIR:AT2G25600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR