1. Home
  2. Mutant Lines
  3. GT15941

GT15941

CSHL Arabidopsis genetrap mutant lines

Original: GT15941

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15941

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 40817 [Map]; Strand: w
      • AT4G00110.1 - [+] show detail - UDP-D-glucuronate 4-epimerase 3
        Distance: -628; Region: promoter
    Flanking Genome Sequence: GT15941 - 3-prime edge 
    AAAGAAACGG TAGAGGATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    ATTCAAGTGT GCCTTTCCAC ATACATTACC CGGACTCACT CACTAGTCAC 
    TATAAATCAA TATCGTTATG TTTTTATCTT ACAATAAGTG AATTTGAAGA 
    ATAAAATAGA GCTTTGATGG ATATTACTAT TATATATGCG GTCTAGTAGA 
    TGCGTGTTGT TATTATATTA TTCCTTGAAG ATTACTCTTT GCTTTTTTGT 
    ACCCCATGGA TAAATGTGCC TTGGTATTAA GTTGCAAATT TGATTTAATT 
    AATCCCTAAA CATGTTACTA GTTAGAGTTT GCACGTGACG ATCTTGGGCA 
    GCACCTAAAC ATGTATTTGT GTGCGTAATT TTGTAATAAG TAAGTGCATC 
    GAGTTTGATG AATCAGTATT TGAATGATAA TTCGATGAAA GTACATTTGT 
    TGCCATAAGA ACCCTAAAGT AAGATCCATA AGGATGATGA AAGCTTCATT 
    AATAATAAAA GTAAAGTTAA TCTACCTATA ATAACTAAAT TAATCAAGAG 
    TGAAACTAAA TCTGTAGAAA ATTAAATGTA AGAGATAGAG ACTAGAGTGA 
    TTAATTAAGC TTTGACTATC CCTTAAATCC TCTAATCTCT TCTGC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 40871 [Map]; Strand: w
      • AT4G00110.1 - [+] show detail - UDP-D-glucuronate 4-epimerase 3
        Distance: -682; Region: promoter
      • AT4G00114.1 - [+] show detail
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT15941 - 5-prime edge 
    CTTTCTCCCT GCACTTGAAC ACGTAGAAAA TGTCTTTATG ATGTGTAAAA 
    GAGAGCTTAG CTTAACAAAA GTCTTTAGCG GCTGCAATAA CCGTATCCAC 
    GGTGAGTCCA AATTTCCTGT AGAGCACATT GGCTGGTGCA CTTGCTCCAA 
    AACTGTCTAC GCCGATGGCT TTTCTTTTGG AGCCAACCAT CTTCTCCCAC 
    CCAAAGGTCG ACCCTGCTTC AATGCTCACT CTTGCTGAAA CCTCTCAAGG 
    TAACACACTT TCTTTGTATT CTTCTCTTTG TTCATCAAAC AGCTCCCAAC 
    TCACCAATGA CACTACTCTC ACTGCTTTTC TTT

AT4G00110.1

Model type
Protein coding
Short Description
UDP-D-glucuronate 4-epimerase 3
Curator Summary
Encodes a putative membrane-anchored UDP-D-glucuronate 4-epimerase.
Computational Description
UDP-D-glucuronate 4-epimerase 3 (GAE3); FUNCTIONS IN: UDP-glucuronate 4-epimerase activity, catalytic activity; INVOLVED IN: cellular metabolic process, carbohydrate metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), Nucleotide sugar epimerase (InterPro:IPR008089); BEST Arabidopsis thaliana protein match is: UDP-D-glucuronate 4-epimerase 2 (TAIR:AT1G02000.1); Has 43399 Blast hits to 43389 proteins in 2971 species: Archae - 792; Bacteria - 26013; Metazoa - 773; Fungi - 412; Plants - 1214; Viruses - 37; Other Eukaryotes - 14158 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00114.1

Model type
Pseudogene
Curator Summary
pseudogene of transketolase
Link
InterPro Scan - TAIR