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Mutant Lines
GT15951

GT15951

CSHL Arabidopsis genetrap mutant lines

Original: GT15951

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15951

Determination of insertion point(s)

3 prime edge [+] show sequence
1. Chromosome: 3; Position: 18830293 [Map]; Strand: c
  - AT3G50670.1 - [+] show detail - U1 small nuclear ribonucleoprotein-70K
    Distance: -675; Region: promoter
  - AT3G50670.2 - [+] show detail - U1 small nuclear ribonucleoprotein-70K
    Distance: -717; Region: promoter
  - AT3G50674.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
    Distance: -870; Region: promoter
Flanking Genome Sequence: GT15951 - 3-prime edge
```
TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAGTAG AAACGCAACA 
ATAGGCGAGG GTGCAAAGTG GCATTTTTAA CAGACGAGTT TGACATATAC 
CCTTCGTCAA AAATTAGTGA TACTCGATGG ATTTATGCGA TGAAACGTAC 
GATAGTCCAC CTACAATGGT CAATTCAAAC TGTGAATCTC TCATCTGACG 
GGTGCTCACA TCACCGTTGC AAGTGCCATA GATAACCT
```

5 prime edge [+] show sequence

Chromosome: 3; Position: 18830228 [Map]; Strand: c
- AT3G50670.1 - [+] show detail - U1 small nuclear ribonucleoprotein-70K
  Distance: -610; Region: promoter
- AT3G50670.2 - [+] show detail - U1 small nuclear ribonucleoprotein-70K
  Distance: -652; Region: promoter
- AT3G50674.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
  Distance: -935; Region: promoter

CCTACTTTCT CCCTAGTTTC TACTATCCCC TTGTATACTA AGAGACCAGT 
TACATGCCCG ATCACATAAG GTTCTTTCTT TCTGCAGCAT CTATAGCCAT 
TGCAACCTTT TTTTATCCAT TCTCGCTTCT GGTGCTGTAG TGCACAAATG 
GAGACGCAAC CAACTATTCT TGGCTCATTT TTTCTCAAAA GGCTTTGATG 
TTGCAACCAA CAACAATTAC GCTGTTAGCG CACGAGACCA ATGGTAAAAG 
GTGTGCCCGT CAAGTTCAAT AGATCTCCAA CCTCGGTTCC ATCATACTTC 
ACAAAATCAT TGGATGGAGA GCCACATCCT ATGGAAGTGA ATCAGTGATG 
GTCATTTGGA AATGCTTAAT TTTTCTTATT ATGGTTACTT TAAAATATTT 
AAAAATTTAG AGCCTGTTAT TGTAAAAATA AATAAAATTG GAATCTATTT 
TAATTATGTT TTTTGTTAAT GGATTTTAGA AAAATATGGG AGCCAAAGAT 
CAACGAATGC CTACAAAACC AATAATTTGA CATGTTAACA AAAAATTGTA 
AAATCCAAAA AAAAAAGGTA ATTGAA

AT3G50670.1

Model type: Protein coding
Short Description: U1 small nuclear ribonucleoprotein-70K
Curator Summary: Encodes U1 snRNP 70K
Computational Description: U1 small nuclear ribonucleoprotein-70K (U1-70K); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U1 small nuclear ribonucleoprotein of 70kDa MW N-terminal (InterPro:IPR022023), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G43370.1); Has 287 Blast hits to 284 proteins in 72 species: Archae - 6; Bacteria - 66; Metazoa - 0; Fungi - 0; Plants - 156; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G50670.2

Model type: Protein coding
Short Description: U1 small nuclear ribonucleoprotein-70K
Curator Summary: Encodes U1 snRNP 70K
Computational Description: U1 small nuclear ribonucleoprotein-70K (U1-70K); FUNCTIONS IN: RNA binding, nucleotide binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U1 small nuclear ribonucleoprotein of 70kDa MW N-terminal (InterPro:IPR022023), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G43370.1); Has 501 Blast hits to 501 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 216; Fungi - 126; Plants - 97; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G50674.1

Model type: Protein coding
Computational Description: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G66790.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR