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GT15982

CSHL Arabidopsis genetrap mutant lines

Original: GT15982

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15982

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1976019 [Map]; Strand: w
      • AT4G04120.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT15982 - 5-prime edge 
    AGGATCCTCT CACTCAGCCA ACTCATCGTC TCCCAATGTG CTCTATGTAA 
    CGTCTAATGG AAATCAAAAC TCCATGTCTC GCGACAACAA TCACAACACT 
    TATCGTGACA ACAACAACAC CGGCTACCGC GACAACAACC ACAACAACTA 
    CAATGGGCAC AACAACAATG GTAGAGGTCG TGGACGTGGA CGTTGCGGTA 
    CCGGCAGTAA CGGCAGTAAC GGCAGAGGTC GTGGACGCCA AAACTGGCAA 
    TGGAATCCTC GCAATTGGCA GACACAACAA CCATGGCTCT CAACACCAAC 
    CCCATATCCA CACTGGCCAC AACAAAACTG GATGCAAAGA CCACCGATGG 
    CATACTTGAC AGCCACGAAC CCAGCAGCAG GGCTCCTTGG TTCTTCTCCA 
    CAAGCAGCTA TGGTTGGTTC GACTAATCAA TTGACGCAAA TTCCTGCAAA 
    CCTTGCTGCA GCTTTTGGGA CTACAACTAT GCCAGATCCT ACAGATGCAA 
    GTTGGTACAT GGACACGGGC GCGACAACTC ACCTCACCGC GCAGCCAGGT 
    ACCCTCCATT CCCTTTTTAA TTCGAGCTCA TCCCCATCGG TTGTGTTCGG 
    TAATGGATCT TCTGTTCCAA CTAAAGCCAT CGGTTATTCA TTTTTGCCTT 
    CTAAAATACG ACCTCTCCAT CTTC

AT4G04120.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 3.8e-19 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element)
Link
InterPro Scan - TAIR