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GT15987

CSHL Arabidopsis genetrap mutant lines

Original: GT15987

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15987

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1948925 [Map]; Strand: c
      • AT3G06410.1 - [+] show detail - Zinc finger C-x8-C-x5-C-x3-H type family protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: GT15987 - 3-prime edge 
    ATCCCTAAAC TGCATTGCTT AAAACCGGAA CATAGTTTGA TCAGAAAGAG 
    ATTCAGATAA CAAAACCTGA CAAACCGGAT GTCCCATCCT CTCCGGTAAA 
    GCTCCAGCTT CTTCTCTCTC AACTACAATA ACCTAAACAT CAAAATCAGA 
    GCTTACAAAA AACTTCTTCT TAAGCATTTT GGTTTGTTTA TATGTGCTTT 
    AATTTAACAA TGCCCAGTGA CCAATTTAAC GATCTGATCA TCAGACTCTC 
    AGTAGCTGAT CTGAAATTGA AATTGGTGAA TAAGGAGAAG AATCTGAAAC 
    T

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9666225 [Map]; Strand: w
      • AT4G17230.1 - [+] show detail - SCARECROW-like 13
        Distance: -2451; Region: intergenic
      • AT4G17240.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 368; Region: intergenic
    Flanking Genome Sequence: GT15987 - 5-prime edge 
    ATCACTTGAA CCTCCATACA TAAATGTAAA AGAGACCTCT TTGTTATGAA 
    ATTTTGGGTG

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1948831 [Map]; Strand: c
      • AT3G06410.1 - [+] show detail - Zinc finger C-x8-C-x5-C-x3-H type family protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: GT15987 - 5-prime edge 
    CCTACTTTCT CCCTGATGCA GTTTCATTTA TCTGCTTTTG TTTATTTAAG 
    AGAAATCTGT GAACTTTTTT TTTTTTTTTT TTTTTCCCCC AATTTTTTTG 
    CAAACGGGGC CGGAAAAATT GGGGGTTTTT TGAAAAATTC CCCCCCCAAA 
    AAAAAGGGGG GGGGGGGGCC CCCCCCCCCC CCCCCCCCAA AATTTTTGGG 
    AAAACCCTTA CCCCCCGGGT GGTCTTCAAA CCCCCCAAAG GGGTGGGGGG 
    GGCCCCCCCC CTTTGTTTGG GAAACCCCAA AAACCCCCCA AAAATTTTTT 
    TTACGGGGAA AAAAAAAGGT TTTTTTTTTT TTAAAAACCC GGCGGGGAAA 
    ATTTGGTTTG ATTTGAAAAA AAAACCCCCC CGGGCCCCCC CTTGAAAGGG 
    GCCCCCCCCA AGGCCCCAAA AAAGGGGCCC CCACCCCCCC CCCGGGGTTA 
    AAAAATTTTT TTCCAAAACT TAAACCCCAA TTTTTTCCTT CCCCCAAAAA 
    AAAGGGGG

AT3G06410.1

Model type
Protein coding
Short Description
Zinc finger C-x8-C-x5-C-x3-H type family protein
Computational Description
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT5G18550.1); Has 3128 Blast hits to 1576 proteins in 227 species: Archae - 0; Bacteria - 85; Metazoa - 789; Fungi - 248; Plants - 1012; Viruses - 7; Other Eukaryotes - 987 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G17230.1

Model type
Protein coding
Short Description
SCARECROW-like 13
Curator Summary
Encodes a scarecrow-like protein (SCL13). Member of GRAS gene family.
Computational Description
SCARECROW-like 13 (SCL13); CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: scarecrow-like 5 (TAIR:AT1G50600.1); Has 2512 Blast hits to 2467 proteins in 302 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 2508; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G17240.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages.
Link
InterPro Scan - TAIR