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GT15988

CSHL Arabidopsis genetrap mutant lines

Original: GT15988

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15988

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9666119 [Map]; Strand: c
      • AT4G17230.1 - [+] show detail - SCARECROW-like 13
        Distance: -2345; Region: intergenic
      • AT4G17240.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 474; Region: intergenic
    Flanking Genome Sequence: GT15988 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCTGATAA 
    ATCGTGTTAA TTATAGTGGT AAATAAATGT CTAGTTCATC ACTTGAACCT 
    CCATACATAA ATGTAAAAGT GACATCTTTG TGATGAAATT TTGGGTGTTG 
    GAGGTTAATG TTTATTTGAG AATCAAAAAT AGGATGTCAA AATTGATGGT 
    AAACAAATAA TCATAGTTAT GGAGGAAACT AAGACAGAAA TGAGGGAGAC 
    ATTGAGCATG AGAAGAAAAA AAAAAATTTG GGAGTAATAG GGGGGAGGGA 
    AAGGAAAAGG AGTAAGGTAA ATTTAAGGTT TGTCCCCCAT TTTCCCAATT 
    TTAAGGATTT TGCAAATTTT GAAAATGCCA AAGCTTGTTT TTTGAAAAAG 
    GGGAGGGAGT TTCAACTTCT TCTCTAGACT CTCTAATAAA CAACCCTCCT 
    AAGGATATTT TAACCAAGGA GATCTTCAGG GGAAAAAAAG GGATGCACCG 
    AAAACCCTTT TTCTCCCCCC CCCTCCTAAG TCCCCCTTTA ATTTTTTTTG 
    AA

AT4G17230.1

Model type
Protein coding
Short Description
SCARECROW-like 13
Curator Summary
Encodes a scarecrow-like protein (SCL13). Member of GRAS gene family.
Computational Description
SCARECROW-like 13 (SCL13); CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: scarecrow-like 5 (TAIR:AT1G50600.1); Has 2512 Blast hits to 2467 proteins in 302 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 2508; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G17240.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages.
Link
InterPro Scan - TAIR