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GT16010

CSHL Arabidopsis genetrap mutant lines

Original: GT16010

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT16010

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 172901 [Map]; Strand: w
      • AT2G01390.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16010 - 3-prime edge 
    GGATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAACC GTAACATCTC 
    CTTATACACC TCCGTGGCTT CTTCCACCCT CCCATCAGCG AAAAGCATCT 
    TCATGTAAGC AGTGTACGAC ACAACGGTAG GTTCGCACCA ATTATCTCTC 
    ATCTCCTCCC ACAACCTCAT TGCTCCATCC ACATCACCGG AGCTTGAAAC 
    CCAGTGAATC AGCGATGTAT AAGTCACCGT ATCGATCAAC ACACCCTTCT 
    CCTTCATAAG GTGAAAAACA GAGTACATGG ATTGAATCCG ACCGGCTTCT 
    CCGAAGATAT CGAGCATGGT GGTATAAGTG AAGTGGTCGT GTTTGAAACC 
    CTTGATTTGA GCAGCCCAGT TGAAAAAGAG CCAAGCTTTC TGCATCGGAG 
    GATGTGCTTT CAAGACACGG TTGATAATGT GAGAATCCCA TCTGACGCCG 
    AGATGTGGAA GCTGTTCTTG AGCAGAGTCC CAAGTGGAGT ACTTGAGGAT 
    GTTATAGATG TTGGATACAA TGTCTCTTGT GTAAACACTG GGATCTGGTA 
    GGGTCTGTGT TTTCACAAGT TTGGGTTTTT GGGAGAATCG CTTGGAGTTG 
    GTGGGTTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 172969 [Map]; Strand: w
      • AT2G01390.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16010 - 5-prime edge 
    CTTTCTCCCT GGTTACGGTC GCGGGTTTCT CCGAATTGTC ACACTTATAC 
    TGTATTGATG GAGTATCTTG TCGCCACAGG TCAACTTCAT TCTCTTGCAC 
    ACTAAGTGTT TGTTAAAATG CTTAGCTGAA AATCCAAAAC TTTTGCTTTA 
    TGTAGATGAT TCTGGTATCT GAATGTTTTG TAGCCTTGTT GATGATGATG 
    TGTTAGTTTC TTCGTTTGAT TTTGCAGGAA AATGTGAGGA AGCCTTGGAC 
    ATATTCTTTA AAATGCAAGA AATTGGTGTG CAGCCAGATA AAGCAGCTTG 
    CAATATTCTG ATAGCGAAAG CCTTGAAATT TGGGGAAACA TCTTTCATGA 
    CTCGAGTTCT TGTGTACATG AAAGAAAATG GAGTTGTCCT ACGCTATCCT 
    ATCTTTGTTG AAGCTTTAGA GACACTGAAA GCTGCAGGCG AAAGTGATGA 
    TCTGTTAAGG GAAGTCAACT CGCATATTTC CGTTGAATCG TTGTGCTCCA 
    GTGACATTGA TGAGACTCCA ACAGCGGAAG TTGATGACAC TAAGAATTCA 
    GATGATAGTA GAGTTATCAG CTCCGTTCTC TTGATGAAGC AGAATCTGGT 
    TGCAGTTGAC ATTTTACTTA ACCAGATGAG AGATAGGAAC ATAAAGCTGG 
    ATTCTTTTGT TGTTT

AT2G01390.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G01360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR