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GT16024

CSHL Arabidopsis genetrap mutant lines

Original: GT16024

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16024

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17878858 [Map]; Strand: c
      • AT4G38070.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16024 - 5-prime edge 
    TCCACTTTAT CCCTGCTCTA AGGGATTCTT TCTTCTCTGA ATCAGACGAT 
    CTTGCATGGC TGATAACCTT TAGCTTATGC ACCAACTCAT TCTTCTCTTG 
    CTTAATGGCT TCTCCAACTC CAACCTGTTC AAGAAGAGAA GCTTCTACTC 
    TTTTCCGCAG GTTCTGGTTT TGCTCGAGTT CAGCTTTTAG CCTTTTAGCA 
    ATAGATTTCC AGACCCACAA TTGGAATTCA ATCTGGAACA CTTCAGAGGT 
    TTTATCAGAT AATTCAGAAT TTGCTATCTC TAGAGCCTCA GAAACGTCAG 
    CAAGTTTCCT CTTCGAGTCG TTTTCCACAT CTACAACTTT CTCTTGCAAG 
    AGAAGTTGAG TTTTGGTAGA CTCCTCAAGC ATTTCCTTGT AATGATCAAG 
    CTCCCGTTGC CTATGCTCTT CGTTTAGATC AATAGACTCA CTTTTTCTAA 
    CCAATGAGGC AGTCTTCTCA ACCTCTTCTG CCAACTTGGC ATATGCAATG 
    TCCATCTTGC TACAGAGCTC TCTAATATTC TCGTTGGAAT CACTTTCAAG 
    CTGCGAAATC TGCTCCTCTA AAAGCACCCG ACACTTTTCT GATTCCTCCA 
    GCATCTCCTT ATACTCCTGA GTTTCTTTTT CCATCACTAA ATTC

AT4G38070.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11940.1); Has 194780 Blast hits to 83936 proteins in 3334 species: Archae - 2743; Bacteria - 33979; Metazoa - 84944; Fungi - 15379; Plants - 11807; Viruses - 735; Other Eukaryotes - 45193 (source: NCBI BLink).
Link
InterPro Scan - TAIR