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GT16043

CSHL Arabidopsis genetrap mutant lines

Original: GT16043

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16043

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26445322 [Map]; Strand: c
      • AT5G66150.1 - [+] show detail - Glycosyl hydrolase family 38 protein
        Distance: -888; Region: promoter
      • AT5G66160.1 - [+] show detail - receptor homology region transmembrane domain ring H2 motif protein 1
        Distance: 0; Region: exon1 (CDS)
      • AT5G66160.2 - [+] show detail - receptor homology region transmembrane domain ring H2 motif protein 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16043 - 3-prime edge 
    GTAGAGGTTT TTACCGACCG TTACCGACCG TTTTCATCCC TACTCCCAGC 
    CAAATTTGGT CAATTTCTCC CCCTCTTCCT TTTTCCTTAT CCGAAACAAT 
    TTCTCGAACA ATCTGGTTAA AAAGAAGTTG ATTTTGATTC TCAGACGGCT 
    CCGTGACCAA AAACGGAATC TGTGGAGCTC TATACGTCGC AGATCCTCTC 
    GACGGTTGCT CACCGCTTCT CCACGCCGCC GCATCCAACT GGACGCAACA 
    CAGAACTACT AAGTTCGCTT TGATAATCAG AGGCGAATGT TCTTTTGAGG 
    ATAAGCTGCT CAATGCCCAG AACTCAGGTT TTCAAGCTGT GATTGTCTAT 
    GACAACATTG ACAACGAAGA TCTCATCGTC AGTAAGCCTT TTGCCTCCCA 
    CCCAAGTTTA AAATTCCATC TTTTCTTCTC CTGATGAGCT AGGGTTGAGC 
    TGAATTTCAT TGGAGTTATT TAATTTAGTC AACGCCCCCA TAAGTTTGGA 
    GATTGACCAA CATCTGTTTT GCACAGTGAA GGTGAACCCT CAGGACATTA 
    CAGTTGATGC AGTCTTCGTT TCAAATGTCG CCGGTGAGAT TTTGAGAAAG 
    TACGCGAGAG GCCGAGATGG TGAATGCTGC CTTAATCCGC CAGACAGAGG 
    GAGCGCTTGG ACTGTGTTGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26445237 [Map]; Strand: c
      • AT5G66150.1 - [+] show detail - Glycosyl hydrolase family 38 protein
        Distance: -803; Region: promoter
      • AT5G66160.1 - [+] show detail - receptor homology region transmembrane domain ring H2 motif protein 1
        Distance: 0; Region: exon1 (CDS)
      • AT5G66160.2 - [+] show detail - receptor homology region transmembrane domain ring H2 motif protein 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16043 - 5-prime edge 
    GGCAAAAGAG GCGGAGATGG AATTGAGGAC AACAGTGGCG AGTGAGACTC 
    GTAACAGAGA GGAGAGAAAA GGAGCTGCAA CTAGTAGACA GCTTGAGACG 
    ACTAGTCTCA TCTCTCTCTC TTTTCGCTTT CTCGGTCGAT CGATGGCTTT 
    TCAGTTTCAG GCTGTCGCCG AAATGCATTG GTTTCTTCAC CAGAGAGAAC 
    CTTCTACTCG TCTCAGAGGC TTTAAAGATT AGTTCGTTAA TTTATATTTT 
    ATATACGGAA TGAAAACGAC GACGTACAAA CAAAGCCTCC TTTGCAAGCA 
    AACAACCCCC AAGCCAAATG AAGATAACAA AACAGTTGCA ATGATGTAAA 
    TGACTTGTTG TTGAGATTTT TATACTAAAA TGTTACTAGC TCAAAGATTT 
    GCTTCTATTC TCTGTAAAGA CGTGGTTTAA TTATCTCTAT ATTGATTGAT 
    TTGTGTATTA TCAAAGAAAG GGAGATTTTT TCCCAAAACT ATTTGTTAAA 
    TAAAATTAAA GAAAAGGTAA ATGACTATTG TCAAAACTCA AAACAGATCA 
    ACTTCAATTT TAATGTTGAC ATCAAAGTAG AAGAAAAAAA GATTTAATAA 
    AGTACTATTT TAGGGTCAAG ATTTTAATTA AATTTGTAGG AAAATAAGAT 
    TATTGTAGAA CCTAATTAAT TATTACATAT GGTGAAATGA CAATCTAGTC 
    ACAGTAAAAC AATAGAGAGA CTCTAACAAA GACCGACGGA TCTGAGCAAA 
    AACAAACGAT AAGGATT

AT5G66150.1

Model type
Protein coding
Short Description
Glycosyl hydrolase family 38 protein
Computational Description
Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sperm cell, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT5G13980.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66160.1

Model type
Protein coding
Short Description
receptor homology region transmembrane domain ring H2 motif protein 1
Curator Summary
Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles.
Computational Description
receptor homology region transmembrane domain ring H2 motif protein 1 (RMR1); FUNCTIONS IN: peptidase activity, zinc ion binding; INVOLVED IN: intracellular protein transport; LOCATED IN: extrinsic to vacuolar membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Protease-associated (PA) RING/U-box zinc finger family protein (TAIR:AT1G71980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66160.2

Model type
Protein coding
Short Description
receptor homology region transmembrane domain ring H2 motif protein 1
Curator Summary
Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles.
Computational Description
receptor homology region transmembrane domain ring H2 motif protein 1 (RMR1); FUNCTIONS IN: peptidase activity, zinc ion binding; INVOLVED IN: intracellular protein transport; LOCATED IN: extrinsic to vacuolar membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Protease-associated (PA) RING/U-box zinc finger family protein (TAIR:AT1G71980.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR