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GT16067

CSHL Arabidopsis genetrap mutant lines

Original: GT16067

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT16067

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 548155 [Map]; Strand: w
      • AT1G02580.1 - [+] show detail - SET domain-containing protein
        Distance: 0; Region: exon14 (CDS)
    Flanking Genome Sequence: GT16067 - 3-prime edge
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TACAGACAAG 
    AACATCCGAC TTTCCGGTGC GAATCTAGTC CAATACGGGA AATGATAGTT
    AAATGTCTTT CGTATAAATA ATTTGAAATT TTCGGTACGG ATTTGACCTT
    GATTACCTTT TTATTGGTTT GAAGGAGGAA TTGCATGTTC TTGCATTGGA
    TTTGCACTGG TGTCTCACCA AGAGTGCCAT CTCCACAGCT ATATATAAAG
    TTTTTTTTAT AAGACTTTTG GTTTGAATTA CTTTGATTAT AGAATTTGTA
    TAAAGAGATA TTGAAGTGAA AGTGTTACCT AAGAGGACAA CTCCGACAAA
    GATCTGGATC GCATTCACGA TTAGCAGCAA AACAAGGACA TTGTCGATTT
    GTGCATTGGC CAATTGCACA ATTACATCCT CCAAAGCGAT TGTTGCAATC
    CTTTGAGCAC CTGAACAAAA AATACAAACT CATGTTCAAA TTAAATCTCA
    TGGATCTTCC GGCTTAGGAA AAATTGAATG ACATACCCGC AATATTTCTC
    GCAGCA

AT1G02580.1

Model type
Protein coding
Short Description
SET domain-containing protein
Curator Summary
Encodes a putative transcription factor MEDEA (MEA) that negatively regulates seed development in the absence of fertilization. Mutations in this locus result in embryo lethality. MEA is a Polycomb group gene that is imprinted in the endosperm. The maternal allele is expressed and the paternal allele is silent. MEA is controlled by DEMETER (DME), a DNA glycosylase required to activate MEA expression, and METHYLTRANSFERASE I (MET1), which maintains CG methylation at the MEA locus. MEA is involved in the negative regulation of its own imprinted gene expression; the effect is not only allele-specific but also dynamically regulated during seed development. In the ovule, the MEA transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization
Computational Description
MEDEA (MEA); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: SET domain-containing protein (TAIR:AT4G02020.1); Has 4870 Blast hits to 4762 proteins in 465 species: Archae - 0; Bacteria - 401; Metazoa - 1924; Fungi - 484; Plants - 1009; Viruses - 0; Other Eukaryotes - 1052 (source: NCBI BLink).
Link
InterPro Scan - TAIR