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GT16102

CSHL Arabidopsis genetrap mutant lines

Original: GT16102

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16102

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5787414 [Map]; Strand: w
      • AT1G16916.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -302; Region: promoter
      • AT1G16920.1 - [+] show detail - RAB GTPase homolog A1B
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: GT16102 - 5-prime edge
    TCCTCTTTCT CCCTGGTTAA TAAAATTATG TAGTGTATGG TCTAAAACTC 
    ATACAAATGT CGATAGTGTT ACAAAACAAG GACATAATCA AACAATGGAC
    CATGGGGGTT ATAATTCTCT CTCAACAGTG AAAACAAAAA AAGGCTTCAA
    TTTGAGCAGC ACCCGAGTTT CTTCATCTCA CACAACTAGT TTTTAACTTC
    GATTTTCTCA CCTTTCGGGA CAGAGGCGTT CCCATCTTCA CCAGCTTCCA
    CTTGCTTCTT GCTTGTGATG CGATAAATTT GTGTCAACAC CTCTGCAAAT
    GCGTCCTCCA CATTGGTAGC TTCAAGGGCA GATGTTTCCA TGAAGCAGAG
    CGATTCTTGT TCCGCATAGG ACTTCCCGTC TTCTGTAGGA ACAGCTAGCA
    AGTGGCGGAG ATCAGATTTG TTACCAACCA GCATCACTAC AATGTTTGGA
    TCTGTGTGGT TCTTGAGCTC CTTTAACCAC CGATCTACGT TCTCAAATGT
    TGCACGGCGA GTTACATCAT ATACTAGGAG TGCACCCACG GCTCCACGGT
    AATATGCACT AGTGATGGCA CGGTACCTGA GACGAGAAGC AAAAGTGAGT
    CTTCAAATTG TGGCGAGAAT CAGTGGTTGA CAGAACAAAA GGTGTCAGAG
    AAGAAAATTC TTATAAGCTT TTTATGTTTT GCCAAAAGTG ATAATTAAAT
    TGGT

AT1G16916.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G16920.1

Model type
Protein coding
Short Description
RAB GTPase homolog A1B
Curator Summary
small GTP-binding protein (Rab11)similar to YPT3/RAB11 proteins in yeast and mammals, respectively. YPT3/RAB11 is involved in intracellular protein trafficking.
Computational Description
RAB GTPase homolog A1B (RABA1b); FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport; LOCATED IN: trans-Golgi network, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Rab11-related (InterPro:IPR015595), Small GTPase, Rho type (InterPro:IPR003578), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Small GTPase (InterPro:IPR020851), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1D (TAIR:AT4G18800.1); Has 28198 Blast hits to 28143 proteins in 766 species: Archae - 30; Bacteria - 158; Metazoa - 14550; Fungi - 4232; Plants - 3316; Viruses - 20; Other Eukaryotes - 5892 (source: NCBI BLink).
Link
InterPro Scan - TAIR