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GT16115

CSHL Arabidopsis genetrap mutant lines

Original: GT16115

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16115

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10369384 [Map]; Strand: c
      • AT1G29650.1 - [+] show detail - transposable element gene
        Distance: 6189; Region: intergenic
      • AT1G29660.1 - [+] show detail - GDSL-like Lipase/Acylhydrolase superfamily protein
        Distance: -2455; Region: intergenic
    Flanking Genome Sequence: GT16115 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACCTCTC ACACGTATTA 
    TGCTTTTGTC TACCATAGCT AGCCAAATCT TTTCATCACT TTTTAATCGT 
    TTTTCATTAT AAGTTATTTC TTTACAGTTT ACCATTTTTT TTTTAAAAAT 
    AGCTGTAGAT ATTCCAAGCA ATGAGCGAAA TGTTTTGGGA TATCATAATA 
    TTGAATATTA TTATCCTGTT TTCGCATACT TAACATATAA GCTTTTTAAA 
    ACCCGTTATC ATTATACATT AAGTTATAAA CCAACTTATT TTTCTTTTGA 
    ATATAATATA ACATTAAATT AAAAAGCAGA TTATCTTCAT AAGATATTTG 
    ATCAAAATAC TAATCTATCT AAACATTAAC AATATATACT AATTAATATC 
    TTTATGTTTT GTTCAAAAGG TACATTCTAC AAAACTTTTG GGGGTTTAGT 
    TAACTTTTGT TGATATATAT ATCAGCTTGA AAAAGAGGGG AACCTTTAAT 
    CGTGCTAACA CGGACCCGAT CCAGTTAAAG TGCTTGTATA GCAAAAAATT 
    GATCTGACTA TTTATTGCAT TAATTGGTAT GGTCACGTTA ATAAATCTTA 
    TTACATTGCG ATTGACGTTA ACGTATGATG TTACTGCTAA CAAGAATTCA 
    AATCAAATTT

AT1G29650.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.5e-28 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT1G29660.1

Model type
Protein coding
Short Description
GDSL-like Lipase/Acylhydrolase superfamily protein
Computational Description
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: apoplast, nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G29670.1); Has 3857 Blast hits to 3814 proteins in 365 species: Archae - 0; Bacteria - 608; Metazoa - 0; Fungi - 87; Plants - 3137; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link
InterPro Scan - TAIR