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GT16172

CSHL Arabidopsis genetrap mutant lines

Original: GT16172

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16172

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT16172 - 3-prime edge 
    CCCTATATGT TCCCGTTCAT GTTTATAGAG TTATTTGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19599975 [Map]; Strand: c
      • AT2G47860.2 - [+] show detail - Phototropic-responsive NPH3 family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT2G47860.3 - [+] show detail - Phototropic-responsive NPH3 family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT2G47860.1 - [+] show detail - Phototropic-responsive NPH3 family protein
        Distance: -4; Region: promoter
    Flanking Genome Sequence: GT16172 - 5-prime edge 
    CCTACTTTCT CCCTGCTTTT AGCAGCAACA CTTTGCTTAT TAGACTCAGG 
    AACAGTAACA ACACCCATTG GATCTTATTA TTATCTATCT CTTCTCCCCA 
    AATAAAGTTG TAAACCTCTT TTTGTGTTAC TGCAAATATG TTTTTGTGTT 
    TCTCCCAAAA ATGTT

AT2G47860.1

Model type
Protein coding
Short Description
Phototropic-responsive NPH3 family protein
Computational Description
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT1G03010.1); Has 884 Blast hits to 856 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 876; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47860.2

Model type
Protein coding
Short Description
Phototropic-responsive NPH3 family protein
Computational Description
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT1G03010.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47860.3

Model type
Protein coding
Short Description
Phototropic-responsive NPH3 family protein
Computational Description
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT1G03010.1).
Link
InterPro Scan - TAIR