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GT16184

CSHL Arabidopsis genetrap mutant lines

Original: GT16184

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16184

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1416615 [Map]; Strand: c
      • AT2G04160.1 - [+] show detail - Subtilisin-like serine endopeptidase family protein
        Distance: -8870; Region: intergenic
      • AT2G04170.1 - [+] show detail - TRAF-like family protein
        Distance: 567; Region: intergenic
    Flanking Genome Sequence: GT16184 - 3-prime edge 
    ATGAAACGGT AGAGGATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA 
    GTTTTTGAGA TCATTTGCAG TTATGTGTTT CTGAATTTGA AAACATGTCA 
    TTCTAAAATC TGAAACAGAT TCAAGAACAC ATGTGCCATC GACACCTTAA 
    GTGTCTATCG ATTTTGGCCC AAAAGATGAA GTAACATCGA GGAAAATAAA 
    TCAAGTTGTG GATCGACAGC CCTTTAGGTC TCGACTAATT AACCAGCTTT 
    TCCCAACGCG AAAATAAATC GTCCTTATGC ACTAGTTGTA AAAACGCTAT 
    TTTTTTTTGA ATATAATTTA ACATTAAATT CAAAAAAAAA AAATGGCCCC 
    CGGGCCAATT TTATCTTTAG GGGTTTCTTA AAGGTTCCAA CTTACCACGG 
    AAACCTTTAT TTTTCCTAAC CCTCCCATTT TCAATAAGGT TCCCTTCGGG 
    AAACCAAAAA AAGGTTTGGC CCCGTTAATT TTTATTTTCC AAAAACCAAA 
    ACCCCCCTTG GGGTTACCTT TATATAGGGC CAAAAACCCC GGGGCCAATT 
    TTTAAGGTGG GTCCCCCT

AT2G04160.1

Model type
Protein coding
Short Description
Subtilisin-like serine endopeptidase family protein
Curator Summary
isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.
Computational Description
AUXIN-INDUCED IN ROOT CULTURES 3 (AIR3); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis, response to auxin stimulus, lateral root morphogenesis; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilase family protein (TAIR:AT5G59810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G04170.1

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT5G26280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR