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GT16190

CSHL Arabidopsis genetrap mutant lines

Original: GT16190

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16190

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 838475 [Map]; Strand: w
      • AT2G02870.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G02870.2 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: 0; Region: exon3 (CDS)
      • AT2G02870.3 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16190 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTACTTA TCATCATCCT 
    CTGGATACAT GTAAGAGTTA GACCAGTTTG ATTCAGAAAG ACGAGAGCTT 
    GAGAAAACCC TTGTACTCAA ACACGAATCT GGTGATCGAT CTTCCAACAT 
    ATCTTCCAAA AACTACCAAT TTTCAGATCA ATCCCAATCC CAAACCCAAA 
    TTAACAAGTC TTCAAATTTC CGAATCTAAC CAATCACCTA ATCAAA

AT2G02870.1

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G14330.1); Has 7278 Blast hits to 4161 proteins in 259 species: Archae - 4; Bacteria - 397; Metazoa - 5328; Fungi - 9; Plants - 1063; Viruses - 147; Other Eukaryotes - 330 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02870.2

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G14330.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02870.3

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G14330.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR