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GT16201

CSHL Arabidopsis genetrap mutant lines

Original: GT16201

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16201

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 348424 [Map]; Strand: w
      • AT2G01810.1 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT16201 - 3-prime edge 
    TTTCATCCCT AGCCTCAGAT CCATCGCTCC CTTCATCGAT GTATCATCCA 
    AAGATATCTT CCTGCAGCCA AAATACATAA TCATTAGATT AACAACTCCA 
    TAAACACTAA TCAACAACTC ACTTAACATT ATCCACTTAG GTTTATAATT 
    GGTTTTGTCC ATTATCAAAA CATCTTCAAA TCTTTACTAA GATTAGCAAA 
    AAGATATCTA ACATGAATGT CACAATCTCT CCTCCTATAA GTAGTAAAGC 
    AAACAACTTT TTAAGTAATC AATGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 348536 [Map]; Strand: w
      • AT2G01810.1 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT16201 - 5-prime edge 
    CTGCTCCATG GTGTTGCATA TGGTCGACCA TGGTTTGGGA AATGGGATTA 
    TATGTTTTCT CATGGAAGCT TTGGGGTCAA AAAAGATCTG TATTGGCGAG 
    CTATTCTCAC TCTTAGCTCA ATAGAAGTTG ACAAGATATT GGAAGAATTA 
    TCTGGAACAA GTAAAGGGAG AGTGATGAAG AAGATCATCG ATTTCTACAG 
    AGGATCCACT GAAAGCCCTT TGGCCACTCT CTCTGATTTG CTTCGGTTCA 
    TGCTTGGTTT CA

AT2G01810.1

Model type
Protein coding
Short Description
RING/FYVE/PHD zinc finger superfamily protein
Computational Description
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G66170.1); Has 637 Blast hits to 622 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 159; Fungi - 216; Plants - 250; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR