Home
Mutant Lines
GT16220

GT16220

CSHL Arabidopsis genetrap mutant lines

Original: GT16220

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16220

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 6730941 [Map]; Strand: c
- AT1G19440.1 - [+] show detail - 3-ketoacyl-CoA synthase 4
  Distance: 10; Region: intergenic
- AT1G19450.1 - [+] show detail - Major facilitator superfamily protein
  Distance: 493; Region: intergenic

CTTTCTCCCT GATTCAACAC GAGTGAGTGT CAGTGAAAGG CAAAGTTGGA 
CAAACGAAAG TTTTGGTTTC TGTAATTCAA TCAGAGCAAA CTTCAATAAT 
AGTAAACAAA CAACCTTTTG TTTAACAATG TCCCTAATTT TATTCTGTGA 
TTTCGTCATT ACACATCTAA GATCTGAAAA CATGAGCTCA AGAACTGTAA 
CTCAAATATC ACAAACTCTC CAAAACACAT AAACAACAAA CACATTGACA 
TTGTCAGAGA TCAAATCTAA GGGTTTCTTC TCTCAGAAAA AAAACAACCA 
TGGATTAGTC TCGAAGTTAC ACAATAACAG TTCCTCAAAC GAAGCTAATA 
GCTTAAAGTT ACCCGGATAC TTGTCAATAC AATCTTCCCA AGGACTGTTG

AT1G19440.1

Model type: Protein coding
Short Description: 3-ketoacyl-CoA synthase 4
Curator Summary: Encodes KCS4, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).
Computational Description: 3-ketoacyl-CoA synthase 4 (KCS4); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity; INVOLVED IN: very long-chain fatty acid metabolic process, cuticle development; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 9 (TAIR:AT2G16280.1); Has 4090 Blast hits to 4073 proteins in 972 species: Archae - 0; Bacteria - 1351; Metazoa - 0; Fungi - 9; Plants - 2623; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G19450.1

Model type: Protein coding
Short Description: Major facilitator superfamily protein
Computational Description: Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G75220.1); Has 32354 Blast hits to 31683 proteins in 2302 species: Archae - 652; Bacteria - 16202; Metazoa - 5205; Fungi - 6407; Plants - 2489; Viruses - 2; Other Eukaryotes - 1397 (source: NCBI BLink).
Link: InterPro Scan - TAIR